8UU7
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | a | 16S Ribosomal RNA | polymer | 1550 | 501949.2 | 1 | GenBank (2027972510) | Listeria innocua | |
| 2 | b | Small ribosomal subunit protein uS2 | polymer | 249 | 28359.7 | 1 | UniProt (A0A6B0JGP5) In PDB | Listeria innocua | |
| 3 | c | Small ribosomal subunit protein uS3 | polymer | 218 | 24587.2 | 1 | UniProt (A0A0U4VSU9) Pfam (PF07650) Pfam (PF00189) In PDB | Listeria innocua | |
| 4 | d | Small ribosomal subunit protein uS4 | polymer | 200 | 22716.9 | 1 | UniProt (A0A6B0JGH8) In PDB | Listeria innocua | |
| 5 | e | Small ribosomal subunit protein uS5 | polymer | 167 | 17516.2 | 1 | UniProt (A0A0U4VSJ3) Pfam (PF00333) Pfam (PF03719) In PDB | Listeria innocua | |
| 6 | f | Small ribosomal subunit protein bS6 | polymer | 97 | 11512.1 | 1 | UniProt (A0A7X0WKH5) Pfam (PF01250) In PDB | Listeria innocua | |
| 7 | g | Small ribosomal subunit protein uS7 | polymer | 156 | 17848.8 | 1 | UniProt (A0A660JPE1) Pfam (PF00177) In PDB | Listeria innocua | |
| 8 | h | Small ribosomal subunit protein uS8 | polymer | 132 | 14667.1 | 1 | UniProt (A0A0U5A6U3) Pfam (PF00410) In PDB | Listeria innocua | |
| 9 | i | Small ribosomal subunit protein uS9 | polymer | 130 | 14473.7 | 1 | UniProt (A0A0U5ADS9) Pfam (PF00380) In PDB | Listeria innocua | |
| 10 | j | Small ribosomal subunit protein uS10 | polymer | 102 | 11703.7 | 1 | UniProt (A0A0U5A730) Pfam (PF00338) In PDB | Listeria innocua | |
| 11 | k | Small ribosomal subunit protein uS11 | polymer | 129 | 13812.9 | 1 | UniProt (A0A0U5AP31) Pfam (PF00411) In PDB | Listeria innocua | |
| 12 | l | Small ribosomal subunit protein uS12 | polymer | 137 | 15216.8 | 1 | UniProt (A0A660JM56) Pfam (PF00164) In PDB | Listeria innocua | |
| 13 | m | Small ribosomal subunit protein uS13 | polymer | 121 | 13739.0 | 1 | UniProt (A0A0U5ARJ0) Pfam (PF00416) In PDB | Listeria innocua | |
| 14 | n | Small ribosomal subunit protein uS14 | polymer | 61 | 7164.7 | 1 | UniProt (A0A0U5AGZ1) Pfam (PF00253) In PDB | Listeria innocua | |
| 15 | o | Small ribosomal subunit protein uS15 | polymer | 89 | 10656.4 | 1 | UniProt (A0A660JLK4) Pfam (PF00312) In PDB | Listeria innocua | |
| 16 | p | Small ribosomal subunit protein bS16 | polymer | 90 | 10404.2 | 1 | UniProt (A0A6B0JQE1) Pfam (PF00886) In PDB | Listeria innocua | |
| 17 | q | Small ribosomal subunit protein uS17 | polymer | 87 | 10057.7 | 1 | UniProt (A0A0U5ADR4) Pfam (PF00366) In PDB | Listeria innocua | |
| 18 | r | Small ribosomal subunit protein bS18 | polymer | 79 | 9119.8 | 1 | UniProt (A0A660JK14) Pfam (PF01084) In PDB | Listeria innocua | |
| 19 | s | Small ribosomal subunit protein uS19 | polymer | 92 | 10498.1 | 1 | UniProt (A0A0U4VSH5) Pfam (PF00203) In PDB | Listeria innocua | |
| 20 | t | Small ribosomal subunit protein bS20 | polymer | 84 | 9189.6 | 1 | UniProt (A0A660JML5) Pfam (PF01649) In PDB | Listeria innocua | |
| 21 | y | E-site Phenylalanine tRNA | polymer | 76 | 24645.9 | 1 | GenBank (1850831943) | Escherichia coli | |
| 22 | v | GTPase HflX | polymer | 418 | 47610.9 | 1 | UniProt (Q8Y8Y0) Pfam (PF13167) Pfam (PF16360) Pfam (PF01926) In PDB | Listeria monocytogenes EGD-e | |
| 23 | w | Ribosome hibernation promoting factor | polymer | 187 | 21664.3 | 1 | UniProt (A0A660JMK7) Pfam (PF02482) Pfam (PF16321) In PDB | Listeria innocua | |
| 24 | A | 23S Ribosomal RNA | polymer | 2932 | 951061.8 | 1 | GenBank (2288068686) | Listeria innocua | |
| 25 | B | 5S Ribosomal RNA | polymer | 116 | 37304.1 | 1 | GenBank (1774324476) | Listeria innocua | |
| 26 | C | Large ribosomal subunit protein uL2 | polymer | 277 | 30568.4 | 1 | UniProt (A0A0U5A742) Pfam (PF03947) Pfam (PF00181) In PDB | Listeria innocua | |
| 27 | D | Large ribosomal subunit protein uL3 | polymer | 209 | 22880.5 | 1 | UniProt (A0A0U5ADD0) Pfam (PF00297) In PDB | Listeria innocua | |
| 28 | E | Large ribosomal subunit protein uL4 | polymer | 207 | 22640.3 | 1 | UniProt (A0A0U4VSH7) Pfam (PF00573) In PDB | Listeria innocua | |
| 29 | F | Large ribosomal subunit protein uL5 | polymer | 179 | 20023.2 | 1 | UniProt (A0A0U5AWX6) Pfam (PF00281) Pfam (PF00673) In PDB | Listeria innocua | |
| 30 | G | Large ribosomal subunit protein uL6 | polymer | 178 | 19433.3 | 1 | UniProt (A0A0U5ALU0) Pfam (PF00347) In PDB | Listeria innocua | |
| 31 | L | Large ribosomal subunit protein uL13 | polymer | 145 | 16228.7 | 1 | UniProt (A0A0U5AGN0) Pfam (PF00572) In PDB | Listeria innocua | |
| 32 | M | Large ribosomal subunit protein uL14 | polymer | 122 | 13248.4 | 1 | UniProt (A0A0U5AP82) Pfam (PF00238) In PDB | Listeria innocua | |
| 33 | N | Large ribosomal subunit protein uL15 | polymer | 146 | 15827.1 | 1 | UniProt (A0A0U5A6S7) Pfam (PF00828) In PDB | Listeria innocua | |
| 34 | O | Large ribosomal subunit protein uL16 | polymer | 144 | 16171.0 | 1 | UniProt (A0A0U4VSU8) Pfam (PF00252) In PDB | Listeria innocua | |
| 35 | P | Large ribosomal subunit protein bL17 | polymer | 135 | 15237.8 | 1 | UniProt (A0A0U4VSW3) Pfam (PF01196) In PDB | Listeria innocua | |
| 36 | Q | Large ribosomal subunit protein uL18 | polymer | 119 | 13107.9 | 1 | UniProt (A0A0U5AR65) Pfam (PF00861) In PDB | Listeria innocua | |
| 37 | R | Large ribosomal subunit protein bL19 | polymer | 114 | 13089.4 | 1 | UniProt (A0A6B0JQF2) Pfam (PF01245) In PDB | Listeria innocua | |
| 38 | S | Large ribosomal subunit protein bL20 | polymer | 119 | 13719.4 | 1 | UniProt (A0A660JH71) Pfam (PF00453) In PDB | Listeria innocua | |
| 39 | T | Large ribosomal subunit protein bL21 | polymer | 102 | 11220.0 | 1 | UniProt (A0A0U5AD18) Pfam (PF00829) In PDB | Listeria innocua | |
| 40 | U | Large ribosomal subunit protein uL22 | polymer | 118 | 12895.9 | 1 | UniProt (A0A0U5ANW2) Pfam (PF00237) In PDB | Listeria innocua | |
| 41 | V | Large ribosomal subunit protein uL23 | polymer | 94 | 10949.7 | 1 | UniProt (A0A0U4MTC5) Pfam (PF00276) In PDB | Listeria innocua | |
| 42 | W | Large ribosomal subunit protein uL24 | polymer | 103 | 11219.3 | 1 | UniProt (A0A0U5AD05) Pfam (PF00467) Pfam (PF17136) In PDB | Listeria innocua | |
| 43 | Y | Large ribosomal subunit protein bL27 | polymer | 96 | 10571.9 | 1 | UniProt (A0A660JMC7) Pfam (PF01016) In PDB | Listeria innocua | |
| 44 | Z | Large ribosomal subunit protein bL28 | polymer | 62 | 7010.4 | 1 | UniProt (A0A660JJV9) Pfam (PF00830) In PDB | Listeria innocua | |
| 45 | 1 | Large ribosomal subunit protein uL29 | polymer | 63 | 7414.5 | 1 | UniProt (A0A0U5AGL9) Pfam (PF00831) In PDB | Listeria innocua | |
| 46 | 2 | Large ribosomal subunit protein uL30 | polymer | 59 | 6504.8 | 1 | UniProt (A0A0U4VSJ1) Pfam (PF00327) In PDB | Listeria innocua | |
| 47 | 3 | Large ribosomal subunit protein bL31B | polymer | 81 | 9274.4 | 1 | UniProt (A0A0U4MT39) Pfam (PF01197) In PDB | Listeria innocua | |
| 48 | 4 | Large ribosomal subunit protein bL32 | polymer | 57 | 6534.6 | 1 | UniProt (A0A660JNN0) Pfam (PF01783) In PDB | Listeria innocua | |
| 49 | 5 | Large ribosomal subunit protein bL33 | polymer | 49 | 6021.0 | 1 | UniProt (A0A660JRA4) Pfam (PF00471) In PDB | Listeria innocua | |
| 50 | 6 | Large ribosomal subunit protein bL34 | polymer | 44 | 5319.5 | 1 | UniProt (A0A660JKZ6) Pfam (PF00468) In PDB | Listeria innocua | |
| 51 | 7 | Large ribosomal subunit protein bL35 | polymer | 66 | 7746.4 | 1 | UniProt (A0A660JIB9) Pfam (PF01632) In PDB | Listeria innocua | |
| 52 | 8 | Large ribosomal subunit protein bL36 | polymer | 37 | 4336.5 | 1 | UniProt (A0A0U5AM58) Pfam (PF00444) In PDB | Listeria innocua | |
| 53 | a, A, D, L, N... | MAGNESIUM ION | non-polymer | 24.3 | 392 | Chemie (MG) | |||
| 54 | 4, 5, 8, n | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 55 | v | PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER | non-polymer | 521.2 | 1 | Chemie (GCP) | |||
| 56 | water | water | 18.0 | 15 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 52 |
| Total formula weight | 2206674.9 | |
| Non-Polymers* | Number of molecules | 397 |
| Total formula weight | 10310.4 | |
| All* | Total formula weight | 2216985.3 |
