8UU5
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (a) | 16S Ribosomal RNA | polymer | 1550 | 501949.2 | 1 | GenBank (2027972510) | Listeria innocua | |
| 2 | B (b) | Small ribosomal subunit protein uS2 | polymer | 249 | 28359.7 | 1 | UniProt (A0A6B0JGP5) | Listeria innocua | |
| 3 | C (c) | Small ribosomal subunit protein uS3 | polymer | 218 | 24587.2 | 1 | UniProt (A0A0U4VSU9) Pfam (PF07650) Pfam (PF00189) | Listeria innocua | |
| 4 | D (d) | Small ribosomal subunit protein uS4 | polymer | 200 | 22716.9 | 1 | UniProt (A0A6B0JGH8) | Listeria innocua | |
| 5 | E (e) | Small ribosomal subunit protein uS5 | polymer | 167 | 17516.2 | 1 | UniProt (A0A0U4VSJ3) Pfam (PF00333) Pfam (PF03719) | Listeria innocua | |
| 6 | F (f) | Small ribosomal subunit protein bS6 | polymer | 97 | 11512.1 | 1 | UniProt (A0A7X0WKH5) Pfam (PF01250) | Listeria innocua | |
| 7 | G (g) | Small ribosomal subunit protein uS7 | polymer | 156 | 17848.8 | 1 | UniProt (A0A660JPE1) Pfam (PF00177) | Listeria innocua | |
| 8 | H (h) | Small ribosomal subunit protein uS8 | polymer | 132 | 14667.1 | 1 | UniProt (A0A0U5A6U3) Pfam (PF00410) | Listeria innocua | |
| 9 | I (i) | Small ribosomal subunit protein uS9 | polymer | 130 | 14473.7 | 1 | UniProt (A0A0U5ADS9) Pfam (PF00380) | Listeria innocua | |
| 10 | J (j) | Small ribosomal subunit protein uS10 | polymer | 102 | 11703.7 | 1 | UniProt (A0A0U5A730) Pfam (PF00338) | Listeria innocua | |
| 11 | K (k) | Small ribosomal subunit protein uS11 | polymer | 129 | 13812.9 | 1 | UniProt (A0A0U5AP31) Pfam (PF00411) | Listeria innocua | |
| 12 | L (l) | Small ribosomal subunit protein uS12 | polymer | 137 | 15216.8 | 1 | UniProt (A0A660JM56) Pfam (PF00164) | Listeria innocua | |
| 13 | M (m) | Small ribosomal subunit protein uS13 | polymer | 121 | 13739.0 | 1 | UniProt (A0A0U5ARJ0) Pfam (PF00416) | Listeria innocua | |
| 14 | N (n) | Small ribosomal subunit protein uS14 | polymer | 61 | 7164.7 | 1 | UniProt (A0A0U5AGZ1) Pfam (PF00253) | Listeria innocua | |
| 15 | O (o) | Small ribosomal subunit protein uS15 | polymer | 89 | 10656.4 | 1 | UniProt (A0A660JLK4) Pfam (PF00312) | Listeria innocua | |
| 16 | P (p) | Small ribosomal subunit protein bS16 | polymer | 90 | 10404.2 | 1 | UniProt (A0A6B0JQE1) Pfam (PF00886) | Listeria innocua | |
| 17 | Q (q) | Small ribosomal subunit protein uS17 | polymer | 87 | 10057.7 | 1 | UniProt (A0A0U5ADR4) Pfam (PF00366) | Listeria innocua | |
| 18 | R (r) | Small ribosomal subunit protein bS18 | polymer | 79 | 9119.8 | 1 | UniProt (A0A660JK14) Pfam (PF01084) | Listeria innocua | |
| 19 | S (s) | Small ribosomal subunit protein uS19 | polymer | 92 | 10498.1 | 1 | UniProt (A0A0U4VSH5) Pfam (PF00203) | Listeria innocua | |
| 20 | T (t) | Small ribosomal subunit protein bS20 | polymer | 84 | 9189.6 | 1 | UniProt (A0A660JML5) Pfam (PF01649) | Listeria innocua | |
| 21 | U (x) | pe/E Hybrid State Phenylalanine tRNA | polymer | 76 | 24644.9 | 1 | GenBank (1850831943) | Escherichia coli | |
| 22 | V (w) | F-Stop mRNA | polymer | 21 | 6792.2 | 1 | Escherichia phage T4 | ||
| 23 | W (A) | 23S Ribosomal RNA | polymer | 2932 | 951061.8 | 1 | GenBank (2288068686) | Listeria innocua | |
| 24 | X (B) | 5S Ribosomal RNA | polymer | 116 | 37304.1 | 1 | GenBank (1774324476) | Listeria innocua | |
| 25 | Y (C) | Large ribosomal subunit protein uL2 | polymer | 277 | 30568.4 | 1 | UniProt (A0A0U5A742) Pfam (PF03947) Pfam (PF00181) | Listeria innocua | |
| 26 | Z (D) | Large ribosomal subunit protein uL3 | polymer | 209 | 22880.5 | 1 | UniProt (A0A0U5ADD0) Pfam (PF00297) | Listeria innocua | |
| 27 | AA (E) | Large ribosomal subunit protein uL4 | polymer | 207 | 22640.3 | 1 | UniProt (A0A0U4VSH7) Pfam (PF00573) | Listeria innocua | |
| 28 | BA (F) | Large ribosomal subunit protein uL5 | polymer | 179 | 20023.2 | 1 | UniProt (A0A0U5AWX6) Pfam (PF00281) Pfam (PF00673) | Listeria innocua | |
| 29 | CA (G) | Large ribosomal subunit protein uL6 | polymer | 178 | 19433.3 | 1 | UniProt (A0A0U5ALU0) Pfam (PF00347) | Listeria innocua | |
| 30 | DA (L) | Large ribosomal subunit protein uL13 | polymer | 145 | 16228.7 | 1 | UniProt (A0A0U5AGN0) Pfam (PF00572) | Listeria innocua | |
| 31 | EA (M) | Large ribosomal subunit protein uL14 | polymer | 122 | 13248.4 | 1 | UniProt (A0A0U5AP82) Pfam (PF00238) | Listeria innocua | |
| 32 | FA (N) | Large ribosomal subunit protein uL15 | polymer | 146 | 15827.1 | 1 | UniProt (A0A0U5A6S7) Pfam (PF00828) | Listeria innocua | |
| 33 | GA (O) | Large ribosomal subunit protein uL16 | polymer | 144 | 16171.0 | 1 | UniProt (A0A0U4VSU8) Pfam (PF00252) | Listeria innocua | |
| 34 | HA (P) | Large ribosomal subunit protein bL17 | polymer | 135 | 15237.8 | 1 | UniProt (A0A0U4VSW3) Pfam (PF01196) | Listeria innocua | |
| 35 | IA (Q) | Large ribosomal subunit protein uL18 | polymer | 119 | 13107.9 | 1 | UniProt (A0A0U5AR65) Pfam (PF00861) | Listeria innocua | |
| 36 | JA (R) | Large ribosomal subunit protein bL19 | polymer | 114 | 13089.4 | 1 | UniProt (A0A6B0JQF2) Pfam (PF01245) | Listeria innocua | |
| 37 | KA (S) | Large ribosomal subunit protein bL20 | polymer | 119 | 13719.4 | 1 | UniProt (A0A660JH71) Pfam (PF00453) | Listeria innocua | |
| 38 | LA (T) | Large ribosomal subunit protein bL21 | polymer | 102 | 11220.0 | 1 | UniProt (A0A0U5AD18) Pfam (PF00829) | Listeria innocua | |
| 39 | MA (U) | Large ribosomal subunit protein uL22 | polymer | 118 | 12895.9 | 1 | UniProt (A0A0U5ANW2) Pfam (PF00237) | Listeria innocua | |
| 40 | NA (V) | Large ribosomal subunit protein uL23 | polymer | 94 | 10949.7 | 1 | UniProt (A0A0U4MTC5) Pfam (PF00276) | Listeria innocua | |
| 41 | OA (W) | Large ribosomal subunit protein uL24 | polymer | 103 | 11219.3 | 1 | UniProt (A0A0U5AD05) Pfam (PF00467) Pfam (PF17136) | Listeria innocua | |
| 42 | PA (Y) | Large ribosomal subunit protein bL27 | polymer | 96 | 10571.9 | 1 | UniProt (A0A660JMC7) Pfam (PF01016) | Listeria innocua | |
| 43 | QA (Z) | Large ribosomal subunit protein bL28 | polymer | 62 | 7010.4 | 1 | UniProt (A0A660JJV9) Pfam (PF00830) | Listeria innocua | |
| 44 | RA (1) | Large ribosomal subunit protein uL29 | polymer | 63 | 7414.5 | 1 | UniProt (A0A0U5AGL9) Pfam (PF00831) | Listeria innocua | |
| 45 | SA (2) | Large ribosomal subunit protein uL30 | polymer | 59 | 6504.8 | 1 | UniProt (A0A0U4VSJ1) Pfam (PF00327) | Listeria innocua | |
| 46 | TA (3) | Large ribosomal subunit protein bL31B | polymer | 81 | 9274.4 | 1 | UniProt (A0A0U4MT39) Pfam (PF01197) | Listeria innocua | |
| 47 | UA (4) | Large ribosomal subunit protein bL32 | polymer | 57 | 6534.6 | 1 | UniProt (A0A660JNN0) Pfam (PF01783) | Listeria innocua | |
| 48 | VA (5) | Large ribosomal subunit protein bL33 | polymer | 49 | 6021.0 | 1 | UniProt (A0A660JRA4) Pfam (PF00471) | Listeria innocua | |
| 49 | WA (6) | Large ribosomal subunit protein bL34 | polymer | 44 | 5319.5 | 1 | UniProt (A0A660JKZ6) Pfam (PF00468) | Listeria innocua | |
| 50 | XA (7) | Large ribosomal subunit protein bL35 | polymer | 66 | 7746.4 | 1 | UniProt (A0A660JIB9) Pfam (PF01632) | Listeria innocua | |
| 51 | YA (8) | Large ribosomal subunit protein bL36 | polymer | 37 | 4336.5 | 1 | UniProt (A0A0U5AM58) Pfam (PF00444) | Listeria innocua | |
| 52 | AB, AC, AD, AE, AF... (a, w, A, c, g...) | MAGNESIUM ION | non-polymer | 24.3 | 490 | Chemie (MG) | |||
| 53 | VT, WT, XJ, YT (4, 5, n, 8) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 54 | AU, BU, CU, DU, EU... (c, d, g, i, m...) | water | water | 18.0 | 323 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 2144190.8 | |
| Non-Polymers* | Number of molecules | 494 |
| Total formula weight | 12171.1 | |
| All* | Total formula weight | 2156361.9 |
