8USZ
Cryo-EM Structure of Full-Length Spike Protein of Omicron XBB.1.5
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1290 | 142729.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, E, F (D, E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G, H, I, J, K... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 19 | Chemie (NAG) |
Sequence modifications
A, B, C: 19 - 1273 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Ile 22 | Thr 19 | conflict |
| - | Leu 24 | deletion |
| - | Pro 25 | deletion |
| - | Pro 26 | deletion |
| Ser 27 | Ala 27 | conflict |
| Ala 83 | Val 83 | conflict |
| Asp 143 | Gly 142 | conflict |
| - | Tyr 144 | deletion |
| Gln 146 | His 146 | conflict |
| Glu 183 | Gln 183 | conflict |
| Glu 213 | Val 213 | conflict |
| Val 252 | Gly 252 | conflict |
| His 339 | Gly 339 | conflict |
| Thr 346 | Arg 346 | conflict |
| Ile 368 | Leu 368 | conflict |
| Phe 371 | Ser 371 | conflict |
| Pro 373 | Ser 373 | conflict |
| Phe 375 | Ser 375 | conflict |
| Ala 376 | Thr 376 | conflict |
| Asn 405 | Asp 405 | conflict |
| Ser 408 | Arg 408 | conflict |
| Asn 417 | Lys 417 | conflict |
| Lys 440 | Asn 440 | conflict |
| Pro 445 | Val 445 | conflict |
| Ser 446 | Gly 446 | conflict |
| Lys 460 | Asn 460 | conflict |
| Asn 477 | Ser 477 | conflict |
| Lys 478 | Thr 478 | conflict |
| Ala 484 | Glu 484 | conflict |
| Pro 486 | Phe 486 | conflict |
| Ser 490 | Phe 490 | conflict |
| Arg 498 | Gln 498 | conflict |
| Tyr 501 | Asn 501 | conflict |
| His 505 | Tyr 505 | conflict |
| Gly 614 | Asp 614 | conflict |
| Tyr 655 | His 655 | conflict |
| Lys 679 | Asn 679 | conflict |
| His 681 | Pro 681 | conflict |
| Lys 764 | Asn 764 | conflict |
| Tyr 796 | Asp 796 | conflict |
| His 954 | Gln 954 | conflict |
| Lys 969 | Asn 969 | conflict |
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Gly 1274 | - | expression tag |
| Gly 1275 | - | expression tag |
| Gly 1276 | - | expression tag |
| Gly 1277 | - | expression tag |
| Ser 1278 | - | expression tag |
| Gly 1279 | - | expression tag |
| Gly 1280 | - | expression tag |
| Gly 1281 | - | expression tag |
| Gly 1282 | - | expression tag |
| Ser 1283 | - | expression tag |
| Trp 1284 | - | expression tag |
| Ser 1285 | - | expression tag |
| His 1286 | - | expression tag |
| Pro 1287 | - | expression tag |
| Gln 1288 | - | expression tag |
| Phe 1289 | - | expression tag |
| Glu 1290 | - | expression tag |
| Lys 1291 | - | expression tag |
| Gly 1292 | - | expression tag |
| Gly 1293 | - | expression tag |
| Gly 1294 | - | expression tag |
| Gly 1295 | - | expression tag |
| Ser 1296 | - | expression tag |
| Gly 1297 | - | expression tag |
| Gly 1298 | - | expression tag |
| Gly 1299 | - | expression tag |
| Gly 1300 | - | expression tag |
| Ser 1301 | - | expression tag |
| Trp 1302 | - | expression tag |
| Ser 1303 | - | expression tag |
| His 1304 | - | expression tag |
| Pro 1305 | - | expression tag |
| Gln 1306 | - | expression tag |
| Phe 1307 | - | expression tag |
| Glu 1308 | - | expression tag |
| Lys 1309 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 428188.8 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1273.2 | |
| Non-Polymers* | Number of molecules | 19 |
| Total formula weight | 4203.0 | |
| All* | Total formula weight | 433664.9 |
