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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8URX

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 30 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
10Ribosomal protein L21polymer10311586.41UniProt (A0A829CSJ4)
In PDB		Escherichia coli
2150S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliLarge ribosomal subunit protein uL22
3250S ribosomal protein L23polymer10011222.21UniProt (A0A829CFV1)
In PDB		Escherichia coli
4350S ribosomal protein L24polymer10411339.31UniProt (A0A1X3KWX7)
In PDB		Escherichia coli
5450S ribosomal protein L25polymer9410713.51UniProt (D7XH79)
In PDB		Escherichia coli
65NT DNA opspolymer3811786.61synthetic construct
76T DNA opspolymer3811534.41synthetic construct
87mRNA with 30 nt long spacerpolymer4714749.31synthetic construct
9950S ribosomal protein L10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli50S ribosomal protein L8,Large ribosomal subunit protein uL10
10A, BE-site and P-site fMet-tRNApolymer7624496.62GenBank (1870104878)Escherichia coli
11AADNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V2)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
In PDB		Escherichia coliRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
12ABTranscription antitermination protein RfaHpolymer16218364.21UniProt (C3SK02)
Pfam (PF02357)
In PDB		Escherichia coli
13AC, ADDNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
In PDB		Escherichia coliRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
14AEDNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (P0A8T7)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
In PDB		Escherichia coliRNAP subunit beta', RNA polymerase subunit beta', Transcriptase subunit beta'
15AFDNA-directed RNA polymerase subunit omegapolymer9110249.51UniProt (P0A800)
Pfam (PF01192)
In PDB		Escherichia coliRNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
16C30S ribosomal protein S18polymer759005.51UniProt (A0A0E2KXL3)
Pfam (PF01084)
In PDB		Escherichia coli
17D16S rRNApolymer1542499690.01GenBank (1732209707)Escherichia coli
18E30S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
In PDB		Escherichia coli
19F30S ribosomal protein S21polymer718524.01UniProt (A0A0E2L2J1)
Pfam (PF01165)
In PDB		Escherichia coli
20G30S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
In PDB		Escherichia coli
21H30S ribosomal protein S1polymer55761238.91UniProt (A0A1X3LHG1)
In PDB		Escherichia coli
22I30S ribosomal protein S3polymer23326031.31UniProt (B7MCS9)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli
23J30S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
24K30S ribosomal protein S5polymer16717629.41UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
25L30S ribosomal protein S6polymer13515727.51UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coliSmall ribosomal subunit protein bS6
26M30S ribosomal protein S7polymer17920055.21UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
27N30S ribosomal protein S8polymer13014146.61UniProt (D7XKZ3)
In PDB		Escherichia coli
28O30S ribosomal protein S9polymer13014886.31UniProt (A0A1X3LT86)
In PDB		Escherichia coli
29P30S ribosomal protein S10polymer10311755.61UniProt (V0ANK5)
In PDB		Escherichia coli
30Q30S ribosomal protein S11polymer12913871.01UniProt (B7MCR3)
Pfam (PF00411)
In PDB		Escherichia coli
31R30S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli
32S30S ribosomal protein S14polymer10111606.61UniProt (U9Y6H3)
In PDB		Escherichia coli
33T30S ribosomal protein S15polymer8910290.81UniProt (D8EB41)
In PDB		Escherichia coli
34U30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
In PDB		Escherichia coli
35V30S ribosomal protein S17polymer849724.51UniProt (A0A8E0MHL6)
In PDB		Escherichia coli
36W30S ribosomal protein S19polymer9210455.41UniProt (S1EA57)
In PDB		Escherichia coli
37X30S ribosomal protein S13polymer11813128.51UniProt (A0A7U9IV78)
Pfam (PF00416)
In PDB		Escherichia coli
38Y50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliLarge ribosomal subunit protein uL11
39Z50S ribosomal protein L7/L12polymer12112309.21UniProt (V0AEG5)
In PDB		Escherichia coli
40a23S rRNApolymer2904941635.41GenBank (937521852)Escherichia coli
41b50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliLarge ribosomal subunit protein bL27
42c50S ribosomal protein L28polymer789027.61UniProt (A0A1X3JA73)
Pfam (PF00830)
In PDB		Escherichia coli
43d5S rRNApolymer12038790.11GenBank (1273279017)Escherichia coli
44e50S ribosomal protein L29polymer637286.51UniProt (D6IEL0)
In PDB		Escherichia coli
45f50S ribosomal protein L30polymer596554.81UniProt (V0YKA9)
In PDB		Escherichia coli
46g50S ribosomal protein L31polymer707887.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coliLarge ribosomal subunit protein bL31-A
47h50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliLarge ribosomal subunit protein uL2
48i50S ribosomal protein L32polymer576463.41UniProt (D7XI28)
In PDB		Escherichia coli
49j50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
50k50S ribosomal protein L33polymer556388.61UniProt (F4NQ61)
In PDB		Escherichia coli
51l50S ribosomal protein L4polymer20122121.61UniProt (A1AGK6)
Pfam (PF00573)
In PDB		Escherichia coli
52m50S ribosomal protein L34polymer465397.51UniProt (B7MGC4)
Pfam (PF00468)
In PDB		Escherichia coli
53n50S ribosomal protein L5polymer17920333.61UniProt (A0A829CFT8)
In PDB		Escherichia coli
54o50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliLarge ribosomal subunit protein bL35,Ribosomal protein A
55p50S ribosomal protein L6polymer17718932.81UniProt (C3SR17)
Pfam (PF00347)
In PDB		Escherichia coli
56q50S ribosomal protein L36polymer384377.41UniProt (A0A0E2L017)
Pfam (PF00444)
In PDB		Escherichia coli
57r50S ribosomal protein L9polymer14915789.01UniProt (V0YZK9)
In PDB		Escherichia coli
58s50S ribosomal protein L13polymer14216050.61UniProt (S1EW51)
In PDB		Escherichia coli
59t50S ribosomal protein L14polymer12313565.11UniProt (S1NW45)
Pfam (PF00238)
In PDB		Escherichia coli
60u50S ribosomal protein L15polymer14415008.51UniProt (A0A037Y8L6)
Pfam (PF00828)
In PDB		Escherichia coli
61v50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
62w50S ribosomal protein L17polymer12714393.71UniProt (A0A1X3LC97)
In PDB		Escherichia coli
63x50S ribosomal protein L18polymer11712794.71UniProt (E3PKY8)
In PDB		Escherichia coli
64y50S ribosomal protein L19polymer11513159.31UniProt (V0AJX1)
In PDB		Escherichia coli
65z50S ribosomal protein L20polymer11813528.01UniProt (B7MAS6)
Pfam (PF00453)
In PDB		Escherichia coli
66AEMAGNESIUM IONnon-polymer24.31Chemie (MG)
67AEZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
a: 1 - 2904 (GenBank: 937521852)
PDBExternal DatabaseDetails
A 887U 472128conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains67
Total formula weight2741242.1
Non-Polymers*Number of molecules3
Total formula weight155.1
All*Total formula weight2741397.2
*Water molecules are not included.

222036

PDB entries from 2024-07-03

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