8UPX
Omicron-S-MERS-RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,SARS-CoV-2 omicron spike with MERS RBD | polymer | 1249 | 138173.4 | 3 | UniProt (A0A7T8KZF1) UniProt (A0A0U2MMB6) UniProt (A0A8B1J577) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, E, F, G, H... (D, E, F, G, H...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 3 | AA, BA, CA, P, Q... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 14 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 327 (UniProt: A0A7T8KZF1)
A, B, C: 341 - 539 (UniProt: A0A0U2MMB6)
A, B, C: 553 - 1226 (UniProt: A0A8B1J577)
A, B, C: 1240 - 1262 (PDB: 8UPX)
| PDB | External Database | Details |
|---|---|---|
| Val 67 | Ala 67 | conflict |
| Ile 93 | Thr 93 | conflict |
| Asp 140 | Gly 140 | conflict |
| - | Val 141 | deletion |
| - | Tyr 142 | deletion |
| - | Asn 208 | deletion |
| Ile 206 | Leu 209 | conflict |
| Glu 209 | - | insertion |
| Pro 210 | - | insertion |
| Glu 211 | - | insertion |
| Gln 328 | - | linker |
| Ala 329 | - | linker |
| Glu 330 | - | linker |
| Gly 331 | - | linker |
| Val 332 | - | linker |
| Glu 333 | - | linker |
| Cys 334 | - | linker |
| Asp 335 | - | linker |
| Phe 336 | - | linker |
| Ser 337 | - | linker |
| Pro 338 | - | linker |
| Leu 339 | - | linker |
| Leu 340 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Cys 540 | - | linker |
| Gly 541 | - | linker |
| Pro 542 | - | linker |
| Lys 543 | - | linker |
| Lys 544 | - | linker |
| Ser 545 | - | linker |
| Thr 546 | - | linker |
| Asn 547 | - | linker |
| Leu 548 | - | linker |
| Val 549 | - | linker |
| Lys 550 | - | linker |
| Asn 551 | - | linker |
| Lys 552 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Lys 562 | Thr 547 | conflict |
| Tyr 670 | His 655 | conflict |
| His 696 | Pro 681 | conflict |
| Gly 697 | Arg 682 | conflict |
| Ser 698 | Arg 683 | conflict |
| Ser 700 | Arg 685 | conflict |
| Lys 779 | Asn 764 | conflict |
| Tyr 811 | Asp 796 | conflict |
| Pro 832 | Phe 817 | conflict |
| Lys 871 | Asn 856 | conflict |
| Pro 907 | Ala 892 | conflict |
| Pro 914 | Ala 899 | conflict |
| Pro 957 | Ala 942 | conflict |
| His 969 | Gln 954 | conflict |
| Lys 984 | Asn 969 | conflict |
| Phe 996 | Leu 981 | conflict |
| Pro 1001 | Lys 986 | conflict |
| Pro 1002 | Val 987 | conflict |
| Gly 1227 | - | linker |
| Ser 1228 | - | linker |
| Gly 1229 | - | linker |
| Tyr 1230 | - | linker |
| Ile 1231 | - | linker |
| Pro 1232 | - | linker |
| Glu 1233 | - | linker |
| Ala 1234 | - | linker |
| Pro 1235 | - | linker |
| Arg 1236 | - | linker |
| Asp 1237 | - | linker |
| Gly 1238 | - | linker |
| Gln 1239 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 414520.2 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5092.8 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 3096.9 | |
| All* | Total formula weight | 422709.9 |
