8UPX
Omicron-S-MERS-RBD
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein,SARS-CoV-2 omicron spike with MERS RBD | polymer | 1249 | 138173.4 | 3 | UniProt (A0A7T8KZF1) UniProt (A0A0U2MMB6) UniProt (A0A8B1J577) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
3 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 14 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 327 (UniProt: A0A7T8KZF1)
A, B, C: 341 - 539 (UniProt: A0A0U2MMB6)
A, B, C: 553 - 1226 (UniProt: A0A8B1J577)
A, B, C: 1240 - 1262 (PDB: 8UPX)
PDB | External Database | Details |
---|---|---|
Val 67 | Ala 67 | conflict |
Ile 93 | Thr 93 | conflict |
Asp 140 | Gly 140 | conflict |
- | Val 141 | deletion |
- | Tyr 142 | deletion |
- | Asn 208 | deletion |
Ile 206 | Leu 209 | conflict |
Glu 209 | - | insertion |
Pro 210 | - | insertion |
Glu 211 | - | insertion |
Gln 328 | - | linker |
Ala 329 | - | linker |
Glu 330 | - | linker |
Gly 331 | - | linker |
Val 332 | - | linker |
Glu 333 | - | linker |
Cys 334 | - | linker |
Asp 335 | - | linker |
Phe 336 | - | linker |
Ser 337 | - | linker |
Pro 338 | - | linker |
Leu 339 | - | linker |
Leu 340 | - | linker |
PDB | External Database | Details |
---|---|---|
Cys 540 | - | linker |
Gly 541 | - | linker |
Pro 542 | - | linker |
Lys 543 | - | linker |
Lys 544 | - | linker |
Ser 545 | - | linker |
Thr 546 | - | linker |
Asn 547 | - | linker |
Leu 548 | - | linker |
Val 549 | - | linker |
Lys 550 | - | linker |
Asn 551 | - | linker |
Lys 552 | - | linker |
PDB | External Database | Details |
---|---|---|
Lys 562 | Thr 547 | conflict |
Tyr 670 | His 655 | conflict |
His 696 | Pro 681 | conflict |
Gly 697 | Arg 682 | conflict |
Ser 698 | Arg 683 | conflict |
Ser 700 | Arg 685 | conflict |
Lys 779 | Asn 764 | conflict |
Tyr 811 | Asp 796 | conflict |
Pro 832 | Phe 817 | conflict |
Lys 871 | Asn 856 | conflict |
Pro 907 | Ala 892 | conflict |
Pro 914 | Ala 899 | conflict |
Pro 957 | Ala 942 | conflict |
His 969 | Gln 954 | conflict |
Lys 984 | Asn 969 | conflict |
Phe 996 | Leu 981 | conflict |
Pro 1001 | Lys 986 | conflict |
Pro 1002 | Val 987 | conflict |
Gly 1227 | - | linker |
Ser 1228 | - | linker |
Gly 1229 | - | linker |
Tyr 1230 | - | linker |
Ile 1231 | - | linker |
Pro 1232 | - | linker |
Glu 1233 | - | linker |
Ala 1234 | - | linker |
Pro 1235 | - | linker |
Arg 1236 | - | linker |
Asp 1237 | - | linker |
Gly 1238 | - | linker |
Gln 1239 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 414520.2 | |
Branched | Number of molecules | 12 |
Total formula weight | 5092.8 | |
Non-Polymers* | Number of molecules | 14 |
Total formula weight | 3096.9 | |
All* | Total formula weight | 422709.9 |