8UOQ
Composite map of PIC_delta_TFIIK form2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (M) | Transcription initiation factor IIB | polymer | 345 | 38257.3 | 1 | UniProt (P29055) Pfam (PF08271) Pfam (PF00382) | Saccharomyces cerevisiae (brewer's yeast) | General transcription factor TFIIB,Transcription factor E |
| 2 | B (A) | DNA-directed RNA polymerase II subunit RPB1 | polymer | 1733 | 191821.6 | 1 | UniProt (P04050) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) Pfam (PF04992) Pfam (PF04990) Pfam (PF05001) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit 1,RNA polymerase II subunit B1,DNA-directed RNA polymerase III largest subunit,RNA polymerase II subunit B220 |
| 3 | C (B) | DNA-directed RNA polymerase II subunit RPB2 | polymer | 1224 | 138937.3 | 1 | UniProt (P08518) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF04566) Pfam (PF04567) Pfam (PF00562) Pfam (PF04560) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit 2,B150,DNA-directed RNA polymerase II 140 kDa polypeptide |
| 4 | D (C) | DNA-directed RNA polymerase II subunit RPB3 | polymer | 318 | 35330.5 | 1 | UniProt (P16370) Pfam (PF01193) Pfam (PF01000) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit 3,RNA polymerase II subunit B3,B44.5,DNA-directed RNA polymerase II 45 kDa polypeptide |
| 5 | E (E) | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | polymer | 215 | 25117.1 | 1 | UniProt (P20434) Pfam (PF03871) Pfam (PF01191) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerases I,II,and III subunit ABC1,ABC27,DNA-directed RNA polymerases I,and III 27 kDa polypeptide |
| 6 | F (F) | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | polymer | 155 | 17931.8 | 1 | UniProt (P20435) Pfam (PF01192) | Saccharomyces cerevisiae (brewer's yeast) | |
| 7 | G (H) | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | polymer | 146 | 16525.4 | 1 | UniProt (P20436) Pfam (PF03870) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerases I,II,and III subunit ABC3,ABC14.4,ABC14.5,DNA-directed RNA polymerases I,and III 14.5 kDa polypeptide |
| 8 | H (I) | DNA-directed RNA polymerase II subunit RPB9 | polymer | 122 | 14308.2 | 1 | UniProt (P27999) Pfam (PF02150) Pfam (PF01096) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit B9,B12.6,DNA-directed RNA polymerase II 14.2 kDa polypeptide,DNA-directed RNA polymerase II subunit 9 |
| 9 | I (J) | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | polymer | 70 | 8290.7 | 1 | UniProt (P22139) Pfam (PF01194) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerases I,II,and III subunit ABC5,ABC10-beta,ABC8,DNA-directed RNA polymerases I,and III 8.3 kDa polypeptide |
| 10 | J (K) | DNA-directed RNA polymerase II subunit RPB11 | polymer | 120 | 13633.5 | 1 | UniProt (P38902) Pfam (PF13656) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit B11,B13.6,DNA-directed RNA polymerase II 13.6 kDa polypeptide |
| 11 | K (L) | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | polymer | 70 | 7730.0 | 1 | UniProt (P40422) Pfam (PF03604) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerases I,II,and III subunit ABC4,ABC10-alpha |
| 12 | L (Q) | Transcription initiation factor IIF subunit alpha | polymer | 735 | 82320.6 | 1 | UniProt (P41895) Pfam (PF05793) | Saccharomyces cerevisiae (brewer's yeast) | TFIIF-alpha,TFIIF large subunit,Transcription factor G 105 kDa subunit,P105 |
| 13 | M (P) | Transcription initiation factor IIF subunit beta | polymer | 400 | 46684.5 | 1 | UniProt (P41896) Pfam (PF17683) Pfam (PF02270) | Saccharomyces cerevisiae (brewer's yeast) | TFIIF medium subunit,TFIIF-beta,Transcription factor G 54 kDa subunit |
| 14 | N (S) | Transcription elongation factor S-II | polymer | 309 | 34903.6 | 1 | UniProt (P07273) Pfam (PF08711) Pfam (PF07500) Pfam (PF01096) | Saccharomyces cerevisiae (brewer's yeast) | DNA strand transfer protein alpha,STP-alpha,DNA strand transferase 1,Pyrimidine pathway regulatory protein 2 |
| 15 | O (O) | TATA-box-binding protein | polymer | 240 | 27042.3 | 1 | UniProt (P13393) Pfam (PF00352) | Saccharomyces cerevisiae (brewer's yeast) | TATA sequence-binding protein,TBP,TATA-binding factor,TATA-box factor,Transcription factor D,Transcription initiation factor TFIID TBP subunit |
| 16 | P (U) | Transcription initiation factor IIA large subunit | polymer | 286 | 32230.8 | 1 | UniProt (P32773) Pfam (PF03153) | Saccharomyces cerevisiae (brewer's yeast) | TFIIA large subunit,TFIIA 32 kDa subunit |
| 17 | Q (V) | Transcription initiation factor IIA subunit 2 | polymer | 122 | 13473.1 | 1 | UniProt (P32774) Pfam (PF02268) Pfam (PF02751) | Saccharomyces cerevisiae (brewer's yeast) | General transcription factor IIA subunit 2,TFIIA 13.5 kDa subunit,Transcription initiation factor IIA small chain,Transcription initiation factor IIA small subunit |
| 18 | R (W) | Transcription initiation factor IIE subunit alpha | polymer | 482 | 54804.8 | 1 | UniProt (P36100) Pfam (PF02002) | Saccharomyces cerevisiae (brewer's yeast) | TFIIE-alpha,Factor A 66 kDa subunit,Transcription factor A large subunit |
| 19 | S (X) | Transcription initiation factor IIE subunit beta | polymer | 328 | 37050.4 | 1 | UniProt (P36145) Pfam (PF02186) Pfam (PF18121) Pfam (PF22254) | Saccharomyces cerevisiae (brewer's yeast) | TFIIE-beta,Factor A 43 kDa subunit,Transcription factor A small subunit |
| 20 | T (D) | DNA-directed RNA polymerase II subunit RPB4 | polymer | 221 | 25451.2 | 1 | UniProt (P20433) Pfam (PF03874) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit B4,B32,DNA-directed RNA polymerase II 32 kDa polypeptide |
| 21 | U (G) | DNA-directed RNA polymerase II subunit RPB7 | polymer | 171 | 19081.1 | 1 | UniProt (P34087) Pfam (PF03876) Pfam (PF00575) | Saccharomyces cerevisiae (brewer's yeast) | RNA polymerase II subunit B7,B16 |
| 22 | V (0) | General transcription and DNA repair factor IIH helicase subunit XPD/RAD3 | polymer | 778 | 89899.0 | 1 | UniProt (P06839) Pfam (PF06733) Pfam (PF06777) Pfam (PF13307) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit XPD,DNA 5'-3' helicase RAD3,DNA repair helicase RAD3,RNA polymerase II transcription factor B subunit RAD3,TFB subunit RAD3 |
| 23 | W (1) | General transcription and DNA repair factor IIH subunit TFB1 | polymer | 642 | 72993.3 | 1 | UniProt (P32776) Pfam (PF08567) Pfam (PF03909) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit TFB1,RNA polymerase II transcription factor B 73 kDa subunit,RNA polymerase II transcription factor B p73 subunit,RNA polymerase II transcription factor B subunit 1 |
| 24 | X (4) | General transcription and DNA repair factor IIH subunit TFB4 | polymer | 338 | 37506.4 | 1 | UniProt (Q12004) Pfam (PF03850) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit TFB4,RNA polymerase II transcription factor B 34 kDa subunit,RNA polymerase II transcription factor B p34 subunit,RNA polymerase II transcription factor B subunit 4 |
| 25 | Y (6) | General transcription and DNA repair factor IIH subunit SSL1 | polymer | 461 | 52370.0 | 1 | UniProt (Q04673) Pfam (PF04056) Pfam (PF07975) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit SSL1,RNA polymerase II transcription factor B subunit SSL1,TFB subunit SSL1,Suppressor of stem-loop protein 1 |
| 26 | Z (7) | General transcription and DNA repair factor IIH helicase subunit XPB | polymer | 843 | 95461.7 | 1 | UniProt (Q00578) Pfam (PF13625) Pfam (PF04851) Pfam (PF16203) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit XPB,DNA repair helicase RAD25,RNA polymerase II transcription factor B subunit SSL2,TFB subunit SSL2,Suppressor of stem-loop mutation 2 |
| 27 | AA (2) | General transcription and DNA repair factor IIH subunit TFB2 | polymer | 513 | 58602.3 | 1 | UniProt (Q02939) Pfam (PF03849) Pfam (PF18307) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit TFB2,RNA polymerase II transcription factor B 52 kDa subunit,RNA polymerase II transcription factor B p52 subunit,RNA polymerase II transcription factor B subunit 2 |
| 28 | BA (5) | General transcription and DNA repair factor IIH subunit TFB5 | polymer | 72 | 8243.5 | 1 | UniProt (Q3E7C1) Pfam (PF06331) | Saccharomyces cerevisiae (brewer's yeast) | TFIIH subunit TFB5,RNA polymerase II transcription factor B subunit 5 |
| 29 | CA (N) | non-template strand | polymer | 64 | 19703.7 | 1 | GenBank (2567904391) | Saccharomyces cerevisiae | |
| 30 | DA (T) | template strand | polymer | 64 | 19724.7 | 1 | GenBank (2567904391) | Saccharomyces cerevisiae | |
| 31 | EA, FA, GA, IA, JA... (M, A, B, C, I...) | ZINC ION | non-polymer | 65.4 | 15 | Chemie (ZN) | |||
| 32 | HA, VA (A, 7) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 33 | PA (0) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 1 | Chemie (SF4) |
Sequence modifications
T: -56 - 7 (GenBank: 2567904391)
| PDB | External Database | Details |
|---|---|---|
| Dc -10 | Dt 663632 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 30 |
| Total formula weight | 1335430.3 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 1381.4 | |
| All* | Total formula weight | 1336811.6 |
