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8UIY

In situ human P-Z state 80S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(Lz)
60S ribosomal protein L10apolymer21724879.41UniProt (P62906)
Pfam (PF00687)
Homo sapiens (human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
2B
(Pt)
P site tRNApolymer7624483.61Homo sapiens (human)
3C
(L5)
28S rRNApolymer36551185150.61Homo sapiens (human)
4D
(L7)
5S rRNA [Homo sapiens]polymer12038691.91GenBank (23898)Homo sapiens (human)
5E
(L8)
5.8S rRNA [Homo sapiens]polymer15650157.71GenBank (2795773355)Homo sapiens (human)
6F
(LA)
60S ribosomal protein L8polymer24826998.61UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
7G
(LB)
Large ribosomal subunit protein uL3polymer40246079.91UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)
8H
(LC)
60S ribosomal protein L4polymer36841747.21UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
9I
(LD)
Large ribosomal subunit protein uL18polymer29334008.31UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (human)
10J
(LE)
Large ribosomal subunit protein eL6polymer25028694.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)60S ribosomal protein L6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
11K
(LF)
60S ribosomal protein L7polymer22526590.71UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
12L
(LG)
60S ribosomal protein L7apolymer24127452.51UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
13M
(LH)
60S ribosomal protein L9polymer19021655.31UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
14N
(LI)
Ribosomal protein uL16-likepolymer21324439.81UniProt (Q96L21)
Pfam (PF00252)
Homo sapiens (human)60S ribosomal protein L10-like,Large ribosomal subunit protein uL16-like
15O
(LJ)
60S ribosomal protein L11polymer17620086.21UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
16P
(LL)
Large ribosomal subunit protein eL13polymer21024190.51UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)
17Q
(LM)
60S ribosomal protein L14polymer13916220.31UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
18R
(LN)
60S ribosomal protein L15polymer20324076.11UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
19S
(LO)
60S ribosomal protein L13apolymer20123431.11UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
20T
(LP)
60S ribosomal protein L17polymer15317757.61UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
21U
(LQ)
60S ribosomal protein L18polymer18721556.51UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
22V
(LR)
60S ribosomal protein L19polymer18722441.01UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
23W
(LS)
60S ribosomal protein L18apolymer17520677.31UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
24X
(LT)
60S ribosomal protein L21polymer15918478.81UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
25Y
(LU)
Heparin-binding protein HBp15polymer10111722.51UniProt (Q7Z4W8)
Pfam (PF01776)
UniProt (by SIFTS) (P35268)
Homo sapiens (human)
26Z
(LV)
60S ribosomal protein L23polymer13113972.41UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
27AA
(LW)
Ribosomal protein L24polymer12414477.01UniProt (A0A994J4A5)
Pfam (PF01246)
UniProt (by SIFTS) (P83731)
Homo sapiens (human)
28BA
(LX)
60S ribosomal protein L23apolymer12013985.51UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
29CA
(LY)
60S ribosomal protein L26polymer13415891.81UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
30DA
(LZ)
60S ribosomal protein L27polymer13515704.61UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
31EA
(La)
60S ribosomal protein L27apolymer14716473.31UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
32FA
(Lb)
Large ribosomal subunit protein eL29polymer12113965.81UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)60S ribosomal protein L29,Cell surface heparin-binding protein HIP
33GA
(Lc)
60S ribosomal protein L30polymer9810954.91UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
34HA
(Ld)
60S ribosomal protein L31polymer10712635.71UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
35IA
(Le)
60S ribosomal protein L32polymer12815022.01UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
36JA
(Lf)
60S ribosomal protein L35apolymer10912433.51UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
37KA
(Lg)
60S ribosomal protein L34polymer11412994.61UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
38LA
(Lh)
60S ribosomal protein L35polymer12214462.41UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
39MA
(Li)
60S ribosomal protein L36polymer10211915.41UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
40NA
(Lj)
60S ribosomal protein L37polymer8610090.91UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)G1.16,Large ribosomal subunit protein eL37
41OA
(Lk)
60S ribosomal protein L38polymer698107.81UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
42PA
(Ll)
60S ribosomal protein L39polymer506295.61UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
43QA
(Lm)
Large ribosomal subunit protein eL40polymer526199.61UniProt (P62987)
Pfam (PF01020)
Homo sapiens (human)60S ribosomal protein L40
44RA
(Ln)
60S ribosomal protein L41polymer243344.31UniProt (P62945)
Pfam (PF05162)
Homo sapiens (human)HG12,Large ribosomal subunit protein eL41
45SA
(Lo)
60S ribosomal protein L36apolymer10512345.81UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
46TA
(Lp)
60S ribosomal protein L37apolymer9110168.21UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
47UA
(Lr)
60S ribosomal protein L28polymer12514320.81UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
48VA
(Ls)
60S acidic ribosomal protein P0polymer19621507.01UniProt (P05388)
Pfam (PF00466)
Pfam (PF17777)
Homo sapiens (human)60S ribosomal protein L10E,Large ribosomal subunit protein uL10
49WA
(Lt)
Large ribosomal subunit protein uL11polymer15716972.61UniProt (P30050)
Pfam (PF03946)
Pfam (PF00298)
Homo sapiens (human)
50XA
(SD)
Small ribosomal subunit protein uS3polymer22725172.61UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (human)
51YA
(SF)
40S ribosomal protein S5polymer18921327.71UniProt (P46782)
Pfam (PF00177)
Homo sapiens (human)Small ribosomal subunit protein uS7
52ZA
(SK)
40S ribosomal protein S10polymer9811774.01UniProt (P46783)
Pfam (PF03501)
Homo sapiens (human)Small ribosomal subunit protein eS10
53AB
(SM)
Small ribosomal subunit protein eS12polymer12213652.01UniProt (P25398)
Pfam (PF01248)
Homo sapiens (human)40S ribosomal protein S12
54BB
(SP)
Small ribosomal subunit protein uS19polymer12114092.61UniProt (P62841)
Pfam (PF00203)
Homo sapiens (human)40S ribosomal protein S15,RIG protein
55CB
(SQ)
Small ribosomal subunit protein uS9polymer14416249.11UniProt (P62249)
Pfam (PF00380)
Homo sapiens (human)40S ribosomal protein S16
56DB
(SR)
Small ribosomal subunit protein eS17polymer13515578.21UniProt (P08708)
Pfam (PF00833)
Homo sapiens (human)40S ribosomal protein S17
57EB
(SS)
40S ribosomal protein S18polymer14517029.81UniProt (P62269)
Pfam (PF00416)
Homo sapiens (human)Ke-3,Ke3,Small ribosomal subunit protein uS13
58FB
(ST)
40S ribosomal protein S19polymer14315822.21UniProt (P39019)
Pfam (PF01090)
Homo sapiens (human)Small ribosomal subunit protein eS19
59GB
(SU)
40S ribosomal protein S20polymer10411765.91UniProt (P60866)
Pfam (PF00338)
Homo sapiens (human)Small ribosomal subunit protein uS10
60HB
(SZ)
Small ribosomal subunit protein eS25polymer758526.11UniProt (P62851)
Pfam (PF03297)
Homo sapiens (human)40S ribosomal protein S25
61IB
(Sc)
40S ribosomal protein S28polymer647263.41UniProt (P62857)
Pfam (PF01200)
Homo sapiens (human)Small ribosomal subunit protein eS28
62JB
(Sd)
40S ribosomal protein S29polymer556559.61UniProt (P62273)
Pfam (PF00253)
Homo sapiens (human)Small ribosomal subunit protein uS14
63KB
(Sf)
Ubiquitin-40S ribosomal protein S27apolymer677884.31UniProt (P62979)
Pfam (PF01599)
Homo sapiens (human)Ubiquitin carboxyl extension protein 80
64LB
(Sg)
Receptor of activated protein C kinase 1polymer31334669.11UniProt (P63244)
Pfam (PF00400)
Homo sapiens (human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
65MB
(SA)
40S ribosomal protein SApolymer22124774.41UniProt (P08865)
Pfam (PF00318)
Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
66NB
(SB)
40S ribosomal protein S3apolymer21424888.31UniProt (P61247)
Pfam (PF01015)
Homo sapiens (human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
67OB
(SC)
40S ribosomal protein S2polymer22224587.01UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
68PB
(SE)
Small ribosomal subunit protein eS4, X isoformpolymer26229523.71UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (human)40S ribosomal protein S4,SCR10,Single copy abundant mRNA protein
69QB
(SG)
40S ribosomal protein S6polymer23727471.51UniProt (P62753)
Pfam (PF01092)
Homo sapiens (human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
70RB
(SH)
Small ribosomal subunit protein eS7polymer18921603.21UniProt (P62081)
Pfam (PF01251)
Homo sapiens (human)40S ribosomal protein S7
71SB
(SI)
40S ribosomal protein S8polymer20624003.01UniProt (P62241)
Pfam (PF01201)
Homo sapiens (human)Small ribosomal subunit protein eS8
72TB
(SJ)
40S ribosomal protein S9polymer18521649.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (human)Small ribosomal subunit protein uS4
73UB
(SL)
40S ribosomal protein S11polymer15317786.01UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (human)Small ribosomal subunit protein uS17
74VB
(SN)
40S ribosomal protein S13polymer15017128.21UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (human)Small ribosomal subunit protein uS15
75WB
(SO)
Small ribosomal subunit protein uS11polymer14015014.21UniProt (P62263)
Pfam (PF00411)
Homo sapiens (human)40S ribosomal protein S14
76XB
(SV)
Small ribosomal subunit protein eS21polymer839124.41UniProt (P63220)
Pfam (PF01249)
Homo sapiens (human)40S ribosomal protein S21
77YB
(SW)
40S ribosomal protein S15apolymer12914734.41UniProt (P62244)
Pfam (PF00410)
Homo sapiens (human)Small ribosomal subunit protein uS8
78ZB
(SX)
40S ribosomal protein S23polymer14115626.41UniProt (P62266)
Pfam (PF00164)
Homo sapiens (human)Small ribosomal subunit protein uS12
79AC
(SY)
40S ribosomal protein S24polymer13115203.01UniProt (P62847)
Pfam (PF01282)
Homo sapiens (human)Small ribosomal subunit protein eS24
80BC
(Sa)
40S ribosomal protein S26polymer10211742.91UniProt (P62854)
Pfam (PF01283)
Homo sapiens (human)Small ribosomal subunit protein eS26
81CC
(Sb)
Small ribosomal subunit protein eS27polymer839349.01UniProt (P42677)
Pfam (PF01667)
Homo sapiens (human)40S ribosomal protein S27,Metallopan-stimulin 1,MPS-1
82DC
(Se)
Small ribosomal subunit protein eS30polymer586539.81UniProt (P62861)
Pfam (PF04758)
Homo sapiens (human)40S ribosomal protein S30
83EC
(S2)
18S rRNApolymer1740562093.61Homo sapiens (human)
84FC
(Zt)
Z site tRNApolymer7524102.31Homo sapiens (human)
85AD, AE, AF, AG, AH...
(L5, L8, S2, LA, LP...)
MAGNESIUM IONnon-polymer24.3219Chemie (MG)
86II, MI, MJ, NI, PJ...
(L5)
SPERMINEnon-polymer202.37Chemie (SPM)
87GJ, HJ, IJ, JJ, KI...
(L5)
SPERMIDINEnon-polymer145.210Chemie (SPD)
88GK, HK, IK, JK, KK...
(Lg, Lj, Lm, Lo, Lp...)
ZINC IONnon-polymer65.46Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains84
Total formula weight3270220.7
Non-Polymers*Number of molecules242
Total formula weight8584.1
All*Total formula weight3278804.8
*Water molecules are not included.

240971

PDB entries from 2025-08-27

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