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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8UGR

In-situ structure of typeX supercomplex in respiratory chain (composite)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11A, 5ANADH-ubiquinone oxidoreductase chain 3polymer11513026.52UniProt (O79880)
Pfam (PF00507)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 3
21B, 5BNADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialpolymer25828500.22UniProt (A0A4X1VVS8)
Pfam (PF01058)
In PDB		Sus scrofa (pig)
31C, 5CNADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrialpolymer26430154.32UniProt (A0A286ZNN4)
Pfam (PF00329)
In PDB		Sus scrofa (pig)
41D, 5DNADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialpolymer47654168.12UniProt (A0A8D0QM68)
Pfam (PF00346)
In PDB		Sus scrofa (pig)
51E, 5ENADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer24927439.52UniProt (A0A4X1VRV3)
Pfam (PF01257)
In PDB		Sus scrofa (pig)
61F, 5FNADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer46450637.82UniProt (A0A4X1SZP7)
Pfam (PF01512)
Pfam (PF22461)
Pfam (PF10589)
In PDB		Sus scrofa (pig)
71G, 5GNADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialpolymer72779627.42UniProt (A0A287ARY3)
Pfam (PF10588)
Pfam (PF22117)
Pfam (PF22151)
Pfam (PF00384)
Pfam (PF09326)
Pfam (PF13510)
In PDB		Sus scrofa (pig)
81H, 5HNADH-ubiquinone oxidoreductase chain 1polymer31835619.42UniProt (A0A0U1RS44)
Pfam (PF00146)
In PDB		Sus scrofa (pig)
91I, 5INADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialpolymer23927135.02UniProt (A0A286ZUN9)
Pfam (PF12838)
In PDB		Sus scrofa (pig)
101J, 5JNADH-ubiquinone oxidoreductase chain 6polymer17519021.32UniProt (O79882)
Pfam (PF00499)
In PDB		Sus scrofa (pig)
111K, 5KNADH-ubiquinone oxidoreductase chain 4Lpolymer9810855.32UniProt (P56632)
Pfam (PF00420)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 4L
121L, 5LNADH-ubiquinone oxidoreductase chain 5polymer60668723.52UniProt (Q9TDR1)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF06455)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 5
131M, 5MNADH-ubiquinone oxidoreductase chain 4polymer45951887.42UniProt (O79881)
Pfam (PF01059)
Pfam (PF00361)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 4
141N, 5NNADH-ubiquinone oxidoreductase chain 2polymer34739105.52UniProt (O79875)
Pfam (PF00361)
Pfam (PF06444)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 2
151O, 5ONADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialpolymer35740476.12UniProt (F1SIS9)
Pfam (PF01712)
In PDB		Sus scrofa (pig)
161P, 5PNADH:ubiquinone oxidoreductase subunit A9polymer37742606.32UniProt (A0A4X1ULW2)
Pfam (PF01370)
In PDB		Sus scrofa (pig)
171Q, 5QNADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialpolymer17519746.52UniProt (A0A4X1SN37)
Pfam (PF04800)
In PDB		Sus scrofa (pig)
181R, 5RNADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer12313349.02UniProt (A0A4X1THU2)
Pfam (PF10276)
In PDB		Sus scrofa (pig)
191S, 5SNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9911099.82UniProt (A0A8D1FN21)
Pfam (PF05047)
In PDB		Sus scrofa (pig)
201T, 1U, 5T, 5UNADH:ubiquinone oxidoreductase subunit AB1polymer15617338.24UniProt (A0A8D1KH26)
Pfam (PF00550)
In PDB		Sus scrofa (pig)
211V, 5VNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1polymer11613321.62UniProt (A0A8D0UWW0)
Pfam (PF04716)
In PDB		Sus scrofa (pig)
221W, 5WNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer12814953.32UniProt (A0A480VKQ8)
Pfam (PF05347)
In PDB		Sus scrofa (pig)
231X, 5XNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8polymer17220064.12UniProt (A0A8D0K6B5)
Pfam (PF06747)
In PDB		Sus scrofa (pig)
241Y, 5YNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11polymer14114686.92UniProt (I3LGM4)
Pfam (PF02466)
In PDB		Sus scrofa (pig)
251Z, 5ZNADH:ubiquinone oxidoreductase subunit A13polymer14416911.62UniProt (A0A8D0K655)
Pfam (PF06212)
In PDB		Sus scrofa (pig)
261a, 5aNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer708034.42UniProt (A0A8D0TJQ4)
Pfam (PF15879)
In PDB		Sus scrofa (pig)
271b, 5bNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3polymer849225.62UniProt (A0A4X1VQ42)
Pfam (PF14987)
In PDB		Sus scrofa (pig)
281c, 5cNADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialpolymer768664.12UniProt (A0A8D1EYQ2)
Pfam (PF15088)
In PDB		Sus scrofa (pig)
291d, 5dNADH dehydrogenase [ubiquinone] 1 subunit C2polymer12214327.72UniProt (A0A480JRW3)
Pfam (PF06374)
In PDB		Sus scrofa (pig)
301e, 5eNADH dehydrogenase [ubiquinone] iron-sulfur protein 5polymer10612506.62UniProt (A0A4X1VX77)
Pfam (PF10200)
In PDB		Sus scrofa (pig)
311f, 5fNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 [Sus scrofa]polymer13515371.92UniProt (A0A8D1IZ33)
Pfam (PF08040)
In PDB		Sus scrofa (pig)
321g, 5gNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialpolymer15417384.72UniProt (A0A8D1EYI7)
Pfam (PF10183)
In PDB		Sus scrofa (pig)
331h, 5hNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialpolymer18921587.02UniProt (F1SGC6)
Pfam (PF09781)
In PDB		Sus scrofa (pig)
341i, 5iNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6polymer12815645.22UniProt (A0A4X1UIV8)
Pfam (PF09782)
In PDB		Sus scrofa (pig)
351j, 5jNADH:ubiquinone oxidoreductase subunit B2polymer10511939.42UniProt (A0A8D1G9F4)
Pfam (PF14813)
In PDB		Sus scrofa (pig)
361k, 5kNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3polymer9811128.52UniProt (A0A4X1VD84)
Pfam (PF08122)
In PDB		Sus scrofa (pig)
371l, 5lNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialpolymer18621658.42UniProt (B8Y651)
Pfam (PF05821)
In PDB		Sus scrofa (pig)
381m, 5mNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4polymer12915117.42UniProt (A0A4X1T6M0)
Pfam (PF07225)
In PDB		Sus scrofa (pig)
391n, 5nNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer17921864.92UniProt (K7GSE5)
Pfam (PF05347)
In PDB		Sus scrofa (pig)
401o, 5oNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7polymer13716567.02UniProt (F1SCH1)
Pfam (PF05676)
In PDB		Sus scrofa (pig)Complex I-B18,NADH-ubiquinone oxidoreductase B18 subunit
411p, 5pNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10polymer17620944.82UniProt (A0A8D0R7A9)
Pfam (PF10249)
In PDB		Sus scrofa (pig)
421q, 5qNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12polymer14517162.42UniProt (F1SQP4)
Pfam (PF05071)
In PDB		Sus scrofa (pig)
431r, 5rNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7polymer11312648.62UniProt (A0A8W4F7N8)
Pfam (PF07347)
In PDB		Sus scrofa (pig)
441s, 5sNADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialpolymer47148217.82UniProt (A0A4X1TE42)
Pfam (PF15880)
In PDB		Sus scrofa (pig)
453A, 3N, 6A, 6NCytochrome b-c1 complex subunit 1, mitochondrialpolymer48052756.34UniProt (A0A8D0PK14)
Pfam (PF00675)
Pfam (PF05193)
In PDB		Sus scrofa (pig)
463B, 3O, 6B, 6OCytochrome b-c1 complex subunit 2, mitochondrialpolymer45348262.44UniProt (F1RPD2)
Pfam (PF00675)
Pfam (PF05193)
In PDB		Sus scrofa (pig)
473C, 3P, 6C, 6PCytochrome bpolymer37942840.74UniProt (Q1HBG9)
Pfam (PF00033)
Pfam (PF00032)
In PDB		Sus scrofa (pig)
483D, 3Q, 6D, 6QCytochrome c1polymer32635488.94UniProt (A0A287AZF9)
Pfam (PF02167)
In PDB		Sus scrofa (pig)
493E, 3I, 3R, 3V, 6E...Cytochrome b-c1 complex subunit Rieske, mitochondrialpolymer27429492.68UniProt (A0A480EHC1)
Pfam (PF09165)
Pfam (PF02921)
Pfam (PF00355)
In PDB		Sus scrofa (pig)
503F, 3S, 6F, 6SCytochrome b-c1 complex subunit 7polymer11113587.54UniProt (A0A286ZPR8)
Pfam (PF02271)
In PDB		Sus scrofa (pig)
513G, 3T, 6G, 6TCytochrome b-c1 complex subunit 8polymer829784.34UniProt (A0A8D0SHY6)
Pfam (PF02939)
In PDB		Sus scrofa (pig)
523H, 3U, 6H, 6UCytochrome b-c1 complex subunit 6, mitochondrialpolymer9110685.84UniProt (A0A8D1JI21)
Pfam (PF02320)
In PDB		Sus scrofa (pig)
533J, 3W, 6J, 6WUbiquinol-cytochrome c reductase complex 7.2 kDa proteinpolymer647281.34UniProt (Q2EN79)
Pfam (PF05365)
In PDB		Sus scrofa (pig)
543X, 3Y, 6X, 6YCytochrome b-c1 complex subunit 10polymer566560.74UniProt (F1SDI2)
Pfam (PF08997)
In PDB		Sus scrofa (pig)
554A, 8ACytochrome c oxidase subunit 1polymer51457020.72UniProt (O79876)
Pfam (PF00115)
In PDB		Sus scrofa (pig)Cytochrome c oxidase polypeptide I
564B, 8BCytochrome c oxidase subunit 2polymer22926288.62UniProt (Q69GF7)
Pfam (PF02790)
Pfam (PF00116)
In PDB		Sus scrofa (pig)
574C, 8CCytochrome c oxidase subunit 3polymer26129753.42UniProt (Q35916)
Pfam (PF00510)
In PDB		Sus scrofa (pig)
584D, 8DCytochrome c oxidase subunit 4polymer16919670.72UniProt (A0A4X1T8J9)
Pfam (PF02936)
In PDB		Sus scrofa (pig)
594E, 8ECytochrome c oxidase subunit 5A, mitochondrialpolymer15216771.22UniProt (F1SJ34)
Pfam (PF02284)
In PDB		Sus scrofa (pig)
604F, 8FCytochrome c oxidase subunit 5B, mitochondrialpolymer12913801.82UniProt (Q5S3G4)
Pfam (PF01215)
In PDB		Sus scrofa (pig)
614G, 8GCytochrome c oxidase subunit 6A2polymer9710876.42UniProt (A0A287AEB7)
Pfam (PF02046)
In PDB		Sus scrofa (pig)
624H, 8HCytochrome c oxidase subunit 6B1polymer8610204.52UniProt (A1XQT1)
Pfam (PF02297)
In PDB		Sus scrofa (pig)
634I, 8ICytochrome c oxidase subunit 6Cpolymer758617.12UniProt (A0A4X1TXH1)
Pfam (PF02937)
In PDB		Sus scrofa (pig)
644J, 8JCytochrome c oxidase subunit 7A1, mitochondrialpolymer809028.52UniProt (Q8SPJ9)
Pfam (PF02238)
In PDB		Sus scrofa (pig)
654K, 8KCytochrome c oxidase subunit 7Bpolymer809169.52UniProt (A0A287BJ57)
Pfam (PF05392)
In PDB		Sus scrofa (pig)
664L, 8LCytochrome c oxidase subunit 7C, mitochondrialpolymer637358.72UniProt (Q1W0Y2)
Pfam (PF02935)
In PDB		Sus scrofa (pig)
674M, 8MCytochrome c oxidase subunit 8polymer707615.92UniProt (A1XQT4)
Pfam (PF02285)
In PDB		Sus scrofa (pig)
684N, 8NCytochrome c oxidase subunit NDUFA4polymer829322.82UniProt (A1XQS3)
Pfam (PF06522)
In PDB		Sus scrofa (pig)
691L, 1d, 5P, 1A, 1M...1,2-Distearoyl-sn-glycerophosphoethanolaminenon-polymer748.136Chemie (3PE)
705B, 1d, 5q, 5P, 1L...1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEnon-polymer790.128Chemie (PC1)
715F, 5G, 1B, 5I, 1F...IRON/SULFUR CLUSTERnon-polymer351.612Chemie (SF4)
725E, 6E, 5G, 6R, 1E...FE2/S2 (INORGANIC) CLUSTERnon-polymer175.88Chemie (FES)
735F, 1FFLAVIN MONONUCLEOTIDEnon-polymer456.32Chemie (FMN)
745G, 1GPOTASSIUM IONnon-polymer39.12Chemie (K)
751L, 1d, 8C, 4B, 1h...CARDIOLIPINnon-polymer1464.020Chemie (CDL)
765O, 1OGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.22Chemie (GTP)
774A, 5O, 1O, 8AMAGNESIUM IONnon-polymer24.34Chemie (MG)
785P, 1PNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.42Chemie (NDP)
795R, 8F, 4F, 1RZINC IONnon-polymer65.44Chemie (ZN)
805n, 5T, 1n, 1T~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioatenon-polymer584.74Chemie (EHZ)
815N, 1hN-ACETYLMETHIONINEnon-polymer191.22Chemie (AME)
821l, 5lMYRISTIC ACIDnon-polymer228.42Chemie (MYR)
835q, 1qN-ACETYLALANINEnon-polymer131.12Chemie (AYA)
846C, 6P, 3C, 3PPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.58Chemie (HEM)
856D, 6Q, 3D, 3QHEME Cnon-polymer618.54Chemie (HEC)
868C, 4B, 4C, 8D, 8G...(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEnon-polymer749.030Chemie (PGV)
878A, 4AHEME-Anon-polymer852.84Chemie (HEA)
888A, 4ACOPPER (II) IONnon-polymer63.52Chemie (CU)
894A, 8ASODIUM IONnon-polymer23.02Chemie (NA)
904B, 8BDINUCLEAR COPPER IONnon-polymer127.12Chemie (CUA)
914B, 8A(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEnon-polymer759.12Chemie (PSC)
928C, 8G, 4C(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEnon-polymer768.14Chemie (PEK)
938H, 4HPHOSPHATE IONnon-polymer95.02Chemie (PO4)
Sequence modifications
1C, 5C: -35 - 228 (UniProt: A0A286ZNN4)
PDBExternal DatabaseDetails
Gln 104Arg 140conflict
Gly 154Asp 190conflict
1D, 5D: -32 - 430 (UniProt: A0A8D0QM68)
PDBExternal DatabaseDetails
Gly 0Glu 33conflict
1f, 5f: -48 - 57 (UniProt: A0A8D1IZ33)
PDBExternal DatabaseDetails
Met -77-initiating methionine
Ala -76-expression tag
Ala -75-expression tag
Ala -74-expression tag
Ile -73-expression tag
Leu -72-expression tag
Lys -71-expression tag
Leu -70-expression tag
Glu -69-expression tag
Glu -68-expression tag
Thr -67-expression tag
Arg -66-expression tag
Gly -65-expression tag
Gly -64-expression tag
Gly -63-expression tag
Glu -62-expression tag
Lys -61-expression tag
Cys -60-expression tag
Asp -59-expression tag
Lys -58-expression tag
Asn -57-expression tag
Gln -56-expression tag
Gly -55-expression tag
Val -54-expression tag
Lys -53-expression tag
Gly -52-expression tag
Arg -51-expression tag
Arg -50-expression tag
Phe -49-expression tag
1o, 5o: 1 - 136 (UniProt: F1SCH1)
PDBExternal DatabaseDetails
Myr 0-insertion
3J, 3W, 6J, 6W: 4 - 67 (UniProt: Q2EN79)
PDBExternal DatabaseDetails
Asn 60Lys 57conflict
Gln 61His 58conflict
Gly 62Lys 59conflict
Lys 63Tyr 60conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains162
Total formula weight3811510.7
Non-Polymers*Number of molecules190
Total formula weight129783.8
All*Total formula weight3941294.4
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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