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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8UGJ

In-situ structure of typeB supercomplex in respiratory chain (composite)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
11ANADH-ubiquinone oxidoreductase chain 3polymer11513026.51UniProt (O79880)
Pfam (PF00507)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 3
21BNADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialpolymer25828500.21UniProt (A0A4X1VVS8)
Pfam (PF01058)
In PDB		Sus scrofa (pig)
31CNADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrialpolymer26430154.31UniProt (A0A286ZNN4)
Pfam (PF00329)
In PDB		Sus scrofa (pig)
41DNADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialpolymer47654168.11UniProt (A0A8D0QM68)
Pfam (PF00346)
In PDB		Sus scrofa (pig)
51ENADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer24927439.51UniProt (A0A4X1VRV3)
Pfam (PF01257)
In PDB		Sus scrofa (pig)
61FNADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer46450637.81UniProt (A0A4X1SZP7)
Pfam (PF01512)
Pfam (PF22461)
Pfam (PF10589)
In PDB		Sus scrofa (pig)
71GNADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialpolymer72779627.41UniProt (A0A287ARY3)
Pfam (PF10588)
Pfam (PF22117)
Pfam (PF22151)
Pfam (PF00384)
Pfam (PF09326)
Pfam (PF13510)
In PDB		Sus scrofa (pig)
81HNADH-ubiquinone oxidoreductase chain 1polymer31835619.41UniProt (A0A0U1RS44)
Pfam (PF00146)
In PDB		Sus scrofa (pig)
91INADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialpolymer23927135.01UniProt (A0A286ZUN9)
Pfam (PF12838)
In PDB		Sus scrofa (pig)
101JNADH-ubiquinone oxidoreductase chain 6polymer17519021.31UniProt (O79882)
Pfam (PF00499)
In PDB		Sus scrofa (pig)
111KNADH-ubiquinone oxidoreductase chain 4Lpolymer9810855.31UniProt (P56632)
Pfam (PF00420)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 4L
121LNADH-ubiquinone oxidoreductase chain 5polymer60668723.51UniProt (Q9TDR1)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF06455)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 5
131MNADH-ubiquinone oxidoreductase chain 4polymer45951887.41UniProt (O79881)
Pfam (PF01059)
Pfam (PF00361)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 4
141NNADH-ubiquinone oxidoreductase chain 2polymer34739105.51UniProt (O79875)
Pfam (PF00361)
Pfam (PF06444)
In PDB		Sus scrofa (pig)NADH dehydrogenase subunit 2
151ONADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialpolymer35740476.11UniProt (F1SIS9)
Pfam (PF01712)
In PDB		Sus scrofa (pig)
161PNADH:ubiquinone oxidoreductase subunit A9polymer37742606.31UniProt (A0A4X1ULW2)
Pfam (PF01370)
In PDB		Sus scrofa (pig)
171QNADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialpolymer17519746.51UniProt (A0A4X1SN37)
Pfam (PF04800)
In PDB		Sus scrofa (pig)
181RNADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer12313349.01UniProt (A0A4X1THU2)
Pfam (PF10276)
In PDB		Sus scrofa (pig)
191SNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9911099.81UniProt (A0A8D1FN21)
Pfam (PF05047)
In PDB		Sus scrofa (pig)
201T, 1UNADH:ubiquinone oxidoreductase subunit AB1polymer15617338.22UniProt (A0A8D1KH26)
Pfam (PF00550)
In PDB		Sus scrofa (pig)
211VNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1polymer11613321.61UniProt (A0A8D0UWW0)
Pfam (PF04716)
In PDB		Sus scrofa (pig)
221WNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer12814953.31UniProt (A0A480VKQ8)
Pfam (PF05347)
In PDB		Sus scrofa (pig)
231XNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8polymer17220064.11UniProt (A0A8D0K6B5)
Pfam (PF06747)
In PDB		Sus scrofa (pig)
241YNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11polymer14114686.91UniProt (I3LGM4)
Pfam (PF02466)
In PDB		Sus scrofa (pig)
251ZNADH:ubiquinone oxidoreductase subunit A13polymer14416911.61UniProt (A0A8D0K655)
Pfam (PF06212)
In PDB		Sus scrofa (pig)
261aNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer708034.41UniProt (A0A8D0TJQ4)
Pfam (PF15879)
In PDB		Sus scrofa (pig)
271bNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3polymer849225.61UniProt (A0A4X1VQ42)
Pfam (PF14987)
In PDB		Sus scrofa (pig)
281cNADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialpolymer768664.11UniProt (A0A8D1EYQ2)
Pfam (PF15088)
In PDB		Sus scrofa (pig)
291dNADH dehydrogenase [ubiquinone] 1 subunit C2polymer12214327.71UniProt (A0A480JRW3)
Pfam (PF06374)
In PDB		Sus scrofa (pig)
301eNADH dehydrogenase [ubiquinone] iron-sulfur protein 5polymer10612506.61UniProt (A0A4X1VX77)
Pfam (PF10200)
In PDB		Sus scrofa (pig)
311fNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 [Sus scrofa]polymer13515371.91UniProt (A0A8D1IZ33)
Pfam (PF08040)
In PDB		Sus scrofa (pig)
321gNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialpolymer15417384.71UniProt (A0A8D1EYI7)
Pfam (PF10183)
In PDB		Sus scrofa (pig)
331hNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialpolymer18921587.01UniProt (F1SGC6)
Pfam (PF09781)
In PDB		Sus scrofa (pig)
341iNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6polymer12815645.21UniProt (A0A4X1UIV8)
Pfam (PF09782)
In PDB		Sus scrofa (pig)
351jNADH:ubiquinone oxidoreductase subunit B2polymer10511939.41UniProt (A0A8D1G9F4)
Pfam (PF14813)
In PDB		Sus scrofa (pig)
361kNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3polymer9811128.51UniProt (A0A4X1VD84)
Pfam (PF08122)
In PDB		Sus scrofa (pig)
371lNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialpolymer18621658.41UniProt (B8Y651)
Pfam (PF05821)
In PDB		Sus scrofa (pig)
381mNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4polymer12915117.41UniProt (A0A4X1T6M0)
Pfam (PF07225)
In PDB		Sus scrofa (pig)
391nNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer17921864.91UniProt (K7GSE5)
Pfam (PF05347)
In PDB		Sus scrofa (pig)
401oNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7polymer13716567.01UniProt (F1SCH1)
Pfam (PF05676)
In PDB		Sus scrofa (pig)Complex I-B18,NADH-ubiquinone oxidoreductase B18 subunit
411pNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10polymer17620944.81UniProt (A0A8D0R7A9)
Pfam (PF10249)
In PDB		Sus scrofa (pig)
421qNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12polymer14517162.41UniProt (F1SQP4)
Pfam (PF05071)
In PDB		Sus scrofa (pig)
431rNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7polymer11312648.61UniProt (A0A8W4F7N8)
Pfam (PF07347)
In PDB		Sus scrofa (pig)
441sNADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialpolymer47148217.81UniProt (A0A4X1TE42)
Pfam (PF15880)
In PDB		Sus scrofa (pig)
453A, 3NCytochrome b-c1 complex subunit 1, mitochondrialpolymer48052756.32UniProt (A0A8D0PK14)
Pfam (PF00675)
Pfam (PF05193)
In PDB		Sus scrofa (pig)
463B, 3OCytochrome b-c1 complex subunit 2, mitochondrialpolymer45348262.42UniProt (F1RPD2)
Pfam (PF00675)
Pfam (PF05193)
In PDB		Sus scrofa (pig)
473C, 3PCytochrome bpolymer37942840.72UniProt (Q1HBG9)
Pfam (PF00033)
Pfam (PF00032)
In PDB		Sus scrofa (pig)
483D, 3QCytochrome c1polymer32635488.92UniProt (A0A287AZF9)
Pfam (PF02167)
In PDB		Sus scrofa (pig)
493E, 3I, 3R, 3VCytochrome b-c1 complex subunit Rieske, mitochondrialpolymer27429542.74UniProt (A0A4X1TWD8)
Pfam (PF09165)
Pfam (PF02921)
Pfam (PF00355)
In PDB		Sus scrofa (pig)
503F, 3SCytochrome b-c1 complex subunit 7polymer11113587.52UniProt (A0A286ZPR8)
Pfam (PF02271)
In PDB		Sus scrofa (pig)
513G, 3TCytochrome b-c1 complex subunit 8polymer829784.32UniProt (A0A8D0SHY6)
Pfam (PF02939)
In PDB		Sus scrofa (pig)
523H, 3UCytochrome b-c1 complex subunit 6, mitochondrialpolymer9110685.82UniProt (A0A8D1JI21)
Pfam (PF02320)
In PDB		Sus scrofa (pig)
533J, 3WUbiquinol-cytochrome c reductase complex 7.2 kDa protein 53 complext iiipolymer606911.02UniProt (Q2EN79)
Pfam (PF05365)
In PDB		Sus scrofa (pig)
543X, 3YCytochrome b-c1 complex subunit 10polymer566560.72UniProt (F1SDI2)
Pfam (PF08997)
In PDB		Sus scrofa (pig)
554A, 8ACytochrome c oxidase subunit 1polymer51457020.72UniProt (O79876)
Pfam (PF00115)
In PDB		Sus scrofa (pig)Cytochrome c oxidase polypeptide I
564B, 8BCytochrome c oxidase subunit 2polymer22926288.62UniProt (Q69GF7)
Pfam (PF02790)
Pfam (PF00116)
In PDB		Sus scrofa (pig)
574C, 8CCytochrome c oxidase subunit 3polymer26129753.42UniProt (Q35916)
Pfam (PF00510)
In PDB		Sus scrofa (pig)
584D, 8DCytochrome c oxidase subunit 4polymer16919670.72UniProt (A0A4X1T8J9)
Pfam (PF02936)
In PDB		Sus scrofa (pig)
594E, 8ECytochrome c oxidase subunit 5A, mitochondrialpolymer15216771.22UniProt (F1SJ34)
Pfam (PF02284)
In PDB		Sus scrofa (pig)
604F, 8FCytochrome c oxidase subunit 5B, mitochondrialpolymer12813663.62UniProt (Q5S3G4)
Pfam (PF01215)
In PDB		Sus scrofa (pig)Cytochrome c oxidase polypeptide Vb
614G, 8GCytochrome c oxidase subunit 6A2polymer9710876.42UniProt (A0A287AEB7)
Pfam (PF02046)
In PDB		Sus scrofa (pig)
624H, 8HCytochrome c oxidase subunit 6B1polymer8610204.52UniProt (A1XQT1)
Pfam (PF02297)
In PDB		Sus scrofa (pig)
634I, 8ICytochrome c oxidase subunit 6Cpolymer758617.12UniProt (A0A4X1TXH1)
Pfam (PF02937)
In PDB		Sus scrofa (pig)
644J, 8JCytochrome c oxidase subunit 7A1, mitochondrialpolymer809028.52UniProt (Q8SPJ9)
Pfam (PF02238)
In PDB		Sus scrofa (pig)
654K, 8KCytochrome c oxidase subunit 7Bpolymer809169.52UniProt (A0A287BJ57)
Pfam (PF05392)
In PDB		Sus scrofa (pig)
664L, 8LCytochrome c oxidase subunit 7C, mitochondrialpolymer637358.72UniProt (Q1W0Y2)
Pfam (PF02935)
In PDB		Sus scrofa (pig)
674M, 8MCytochrome c oxidase subunit 8polymer707615.92UniProt (A1XQT4)
Pfam (PF02285)
In PDB		Sus scrofa (pig)
684N, 8NCytochrome c oxidase subunit NDUFA4polymer829322.82UniProt (A1XQS3)
Pfam (PF06522)
In PDB		Sus scrofa (pig)
691P, 3A, 3Y, 3C, 1Y...1,2-Distearoyl-sn-glycerophosphoethanolaminenon-polymer748.129Chemie (3PE)
701H, 1I, 1Y, 1d, 3J...1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEnon-polymer790.117Chemie (PC1)
711G, 1I, 1B, 1FIRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
721G, 3E, 3R, 1EFE2/S2 (INORGANIC) CLUSTERnon-polymer175.84Chemie (FES)
731FFLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
741GPOTASSIUM IONnon-polymer39.11Chemie (K)
751X, 1H, 3G, 4B, 1L...CARDIOLIPINnon-polymer1464.019Chemie (CDL)
761OGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
774A, 8A, 1OMAGNESIUM IONnon-polymer24.33Chemie (MG)
781PNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
798F, 1R, 4FZINC IONnon-polymer65.43Chemie (ZN)
801T, 1n~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioatenon-polymer584.72Chemie (EHZ)
811Y, 1qN-ACETYLALANINEnon-polymer131.12Chemie (AYA)
821hN-ACETYLMETHIONINEnon-polymer191.21Chemie (AME)
831iCHOLIC ACIDnon-polymer408.61Chemie (CHD)
841lMYRISTIC ACIDnon-polymer228.41Chemie (MYR)
853C, 3PPROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
863D, 3QHEME Cnon-polymer618.52Chemie (HEC)
874J, 4A, 4K, 8G, 4L...(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEnon-polymer749.030Chemie (PGV)
884A, 8AHEME-Anon-polymer852.84Chemie (HEA)
894A, 8ACOPPER (II) IONnon-polymer63.52Chemie (CU)
904A, 8ASODIUM IONnon-polymer23.02Chemie (NA)
914B, 8BDINUCLEAR COPPER IONnon-polymer127.12Chemie (CUA)
924B, 8B(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEnon-polymer759.12Chemie (PSC)
938G, 4C, 4G, 8C(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEnon-polymer768.14Chemie (PEK)
948H, 4HPHOSPHATE IONnon-polymer95.02Chemie (PO4)
Sequence modifications
1C: -35 - 228 (UniProt: A0A286ZNN4)
PDBExternal DatabaseDetails
Gln 104Arg 140conflict
Gly 154Asp 190conflict
1D: -32 - 430 (UniProt: A0A8D0QM68)
PDBExternal DatabaseDetails
Gly 0Glu 33conflict
1f: -48 - 57 (UniProt: A0A8D1IZ33)
PDBExternal DatabaseDetails
Met -77-initiating methionine
Ala -76-expression tag
Ala -75-expression tag
Ala -74-expression tag
Ile -73-expression tag
Leu -72-expression tag
Lys -71-expression tag
Leu -70-expression tag
Glu -69-expression tag
Glu -68-expression tag
Thr -67-expression tag
Arg -66-expression tag
Gly -65-expression tag
Gly -64-expression tag
Gly -63-expression tag
Glu -62-expression tag
Lys -61-expression tag
Cys -60-expression tag
Asp -59-expression tag
Lys -58-expression tag
Asn -57-expression tag
Gln -56-expression tag
Gly -55-expression tag
Val -54-expression tag
Lys -53-expression tag
Gly -52-expression tag
Arg -51-expression tag
Arg -50-expression tag
Phe -49-expression tag
1o: 1 - 136 (UniProt: F1SCH1)
PDBExternal DatabaseDetails
Myr 0-insertion
3E, 3I, 3R, 3V: 1 - 274 (UniProt: A0A4X1TWD8)
PDBExternal DatabaseDetails
Val 34Leu 34conflict
Leu 45Ala 45conflict
Val 49Phe 49conflict
Arg 56Ser 56conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains95
Total formula weight2140438.6
Non-Polymers*Number of molecules146
Total formula weight104841.4
All*Total formula weight2245280.0
*Water molecules are not included.

221716

PDB entries from 2024-06-26

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