8UGI
High resolution in-situ structure of typeA supercomplex in respiratory chain (I1III2IV1,composite)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1A | NADH-ubiquinone oxidoreductase chain 3 | polymer | 115 | 13026.5 | 1 | UniProt (O79880) Pfam (PF00507) In PDB | Sus scrofa (pig) | NADH dehydrogenase subunit 3 |
2 | 1B | NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial | polymer | 258 | 28500.2 | 1 | UniProt (A0A4X1VVS8) Pfam (PF01058) In PDB | Sus scrofa (pig) | |
3 | 1C | NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial | polymer | 264 | 30154.3 | 1 | UniProt (A0A286ZNN4) Pfam (PF00329) In PDB | Sus scrofa (pig) | |
4 | 1D | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial | polymer | 476 | 54168.1 | 1 | UniProt (A0A8D0QM68) Pfam (PF00346) In PDB | Sus scrofa (pig) | |
5 | 1E | NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial | polymer | 249 | 27439.5 | 1 | UniProt (A0A4X1VRV3) Pfam (PF01257) In PDB | Sus scrofa (pig) | |
6 | 1F | NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial | polymer | 464 | 50637.8 | 1 | UniProt (A0A4X1SZP7) Pfam (PF01512) Pfam (PF22461) Pfam (PF10589) In PDB | Sus scrofa (pig) | |
7 | 1G | NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial | polymer | 727 | 79627.4 | 1 | UniProt (A0A287ARY3) Pfam (PF10588) Pfam (PF22117) Pfam (PF22151) Pfam (PF00384) Pfam (PF09326) Pfam (PF13510) In PDB | Sus scrofa (pig) | |
8 | 1H | NADH-ubiquinone oxidoreductase chain 1 | polymer | 318 | 35619.4 | 1 | UniProt (A0A0U1RS44) Pfam (PF00146) In PDB | Sus scrofa (pig) | |
9 | 1I | NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial | polymer | 239 | 27135.0 | 1 | UniProt (A0A286ZUN9) Pfam (PF12838) In PDB | Sus scrofa (pig) | |
10 | 1J | NADH-ubiquinone oxidoreductase chain 6 | polymer | 175 | 19021.3 | 1 | UniProt (O79882) Pfam (PF00499) In PDB | Sus scrofa (pig) | |
11 | 1K | NADH-ubiquinone oxidoreductase chain 4L | polymer | 98 | 10855.3 | 1 | UniProt (P56632) Pfam (PF00420) In PDB | Sus scrofa (pig) | NADH dehydrogenase subunit 4L |
12 | 1L | NADH-ubiquinone oxidoreductase chain 5 | polymer | 606 | 68723.5 | 1 | UniProt (Q9TDR1) Pfam (PF00662) Pfam (PF00361) Pfam (PF06455) In PDB | Sus scrofa (pig) | NADH dehydrogenase subunit 5 |
13 | 1M | NADH-ubiquinone oxidoreductase chain 4 | polymer | 459 | 51887.4 | 1 | UniProt (O79881) Pfam (PF01059) Pfam (PF00361) In PDB | Sus scrofa (pig) | NADH dehydrogenase subunit 4 |
14 | 1N | NADH-ubiquinone oxidoreductase chain 2 | polymer | 347 | 39105.5 | 1 | UniProt (O79875) Pfam (PF00361) Pfam (PF06444) In PDB | Sus scrofa (pig) | NADH dehydrogenase subunit 2 |
15 | 1O | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial | polymer | 357 | 40476.1 | 1 | UniProt (F1SIS9) Pfam (PF01712) In PDB | Sus scrofa (pig) | |
16 | 1P | NADH:ubiquinone oxidoreductase subunit A9 | polymer | 377 | 42606.3 | 1 | UniProt (A0A4X1ULW2) Pfam (PF01370) In PDB | Sus scrofa (pig) | |
17 | 1Q | NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | polymer | 175 | 19746.5 | 1 | UniProt (A0A4X1SN37) Pfam (PF04800) In PDB | Sus scrofa (pig) | |
18 | 1R | NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | polymer | 123 | 13349.0 | 1 | UniProt (A0A4X1THU2) Pfam (PF10276) In PDB | Sus scrofa (pig) | |
19 | 1S | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 | polymer | 99 | 11099.8 | 1 | UniProt (A0A8D1FN21) Pfam (PF05047) In PDB | Sus scrofa (pig) | |
20 | 1T, 1U | NADH:ubiquinone oxidoreductase subunit AB1 | polymer | 156 | 17338.2 | 2 | UniProt (A0A8D1KH26) Pfam (PF00550) In PDB | Sus scrofa (pig) | |
21 | 1V | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1 | polymer | 116 | 13321.6 | 1 | UniProt (A0A8D0UWW0) Pfam (PF04716) In PDB | Sus scrofa (pig) | |
22 | 1W | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 | polymer | 128 | 14953.3 | 1 | UniProt (A0A480VKQ8) Pfam (PF05347) In PDB | Sus scrofa (pig) | |
23 | 1X | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 | polymer | 172 | 20064.1 | 1 | UniProt (A0A8D0K6B5) Pfam (PF06747) In PDB | Sus scrofa (pig) | |
24 | 1Y | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 | polymer | 141 | 14686.9 | 1 | UniProt (I3LGM4) Pfam (PF02466) In PDB | Sus scrofa (pig) | |
25 | 1Z | NADH:ubiquinone oxidoreductase subunit A13 | polymer | 144 | 16911.6 | 1 | UniProt (A0A8D0K655) Pfam (PF06212) In PDB | Sus scrofa (pig) | |
26 | 1a | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 | polymer | 70 | 8034.4 | 1 | UniProt (A0A8D0TJQ4) Pfam (PF15879) In PDB | Sus scrofa (pig) | |
27 | 1b | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 | polymer | 84 | 9225.6 | 1 | UniProt (A0A4X1VQ42) Pfam (PF14987) In PDB | Sus scrofa (pig) | |
28 | 1c | NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial | polymer | 76 | 8664.1 | 1 | UniProt (A0A8D1EYQ2) Pfam (PF15088) In PDB | Sus scrofa (pig) | |
29 | 1d | NADH dehydrogenase [ubiquinone] 1 subunit C2 | polymer | 122 | 14327.7 | 1 | UniProt (A0A480JRW3) Pfam (PF06374) In PDB | Sus scrofa (pig) | |
30 | 1e | NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 | polymer | 106 | 12506.6 | 1 | UniProt (A0A4X1VX77) Pfam (PF10200) In PDB | Sus scrofa (pig) | |
31 | 1f | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 [Sus scrofa] | polymer | 135 | 15371.9 | 1 | UniProt (A0A8D1IZ33) Pfam (PF08040) In PDB | Sus scrofa (pig) | |
32 | 1g | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial | polymer | 154 | 17384.7 | 1 | UniProt (A0A8D1EYI7) Pfam (PF10183) In PDB | Sus scrofa (pig) | |
33 | 1h | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial | polymer | 189 | 21587.0 | 1 | UniProt (F1SGC6) Pfam (PF09781) In PDB | Sus scrofa (pig) | |
34 | 1i | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 | polymer | 128 | 15645.2 | 1 | UniProt (A0A4X1UIV8) Pfam (PF09782) In PDB | Sus scrofa (pig) | |
35 | 1j | NADH:ubiquinone oxidoreductase subunit B2 | polymer | 105 | 11939.4 | 1 | UniProt (A0A8D1G9F4) Pfam (PF14813) In PDB | Sus scrofa (pig) | |
36 | 1k | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 | polymer | 98 | 11128.5 | 1 | UniProt (A0A4X1VD84) Pfam (PF08122) In PDB | Sus scrofa (pig) | |
37 | 1l | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial | polymer | 186 | 21658.4 | 1 | UniProt (B8Y651) Pfam (PF05821) In PDB | Sus scrofa (pig) | |
38 | 1m | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 | polymer | 129 | 15117.4 | 1 | UniProt (A0A4X1T6M0) Pfam (PF07225) In PDB | Sus scrofa (pig) | |
39 | 1n | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 | polymer | 179 | 21864.9 | 1 | UniProt (K7GSE5) Pfam (PF05347) In PDB | Sus scrofa (pig) | |
40 | 1o | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 | polymer | 137 | 16567.0 | 1 | UniProt (F1SCH1) Pfam (PF05676) In PDB | Sus scrofa (pig) | Complex I-B18,NADH-ubiquinone oxidoreductase B18 subunit |
41 | 1p | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 | polymer | 176 | 20944.8 | 1 | UniProt (A0A8D0R7A9) Pfam (PF10249) In PDB | Sus scrofa (pig) | |
42 | 1q | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 | polymer | 145 | 17162.4 | 1 | UniProt (F1SQP4) Pfam (PF05071) In PDB | Sus scrofa (pig) | |
43 | 1r | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 | polymer | 113 | 12648.6 | 1 | UniProt (A0A8W4F7N8) Pfam (PF07347) In PDB | Sus scrofa (pig) | |
44 | 1s | NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial | polymer | 471 | 48217.8 | 1 | UniProt (A0A4X1TE42) Pfam (PF15880) In PDB | Sus scrofa (pig) | |
45 | 3A, 3N | Cytochrome b-c1 complex subunit 1, mitochondrial | polymer | 480 | 52756.3 | 2 | UniProt (A0A8D0PK14) Pfam (PF00675) Pfam (PF05193) In PDB | Sus scrofa (pig) | |
46 | 3B, 3O | Cytochrome b-c1 complex subunit 2, mitochondrial | polymer | 453 | 48262.4 | 2 | UniProt (F1RPD2) Pfam (PF00675) Pfam (PF05193) In PDB | Sus scrofa (pig) | |
47 | 3C, 3P | Cytochrome b | polymer | 379 | 42840.7 | 2 | UniProt (Q1HBG9) Pfam (PF00033) Pfam (PF00032) In PDB | Sus scrofa (pig) | |
48 | 3D, 3Q | Cytochrome c1, heme protein, mitochondrial | polymer | 325 | 35359.8 | 2 | UniProt (A0A4X1UNI7) Pfam (PF02167) In PDB | Sus scrofa (pig) | |
49 | 3E, 3I, 3R, 3V | Cytochrome b-c1 complex subunit Rieske, mitochondrial | polymer | 274 | 29492.6 | 4 | UniProt (A0A480EHC1) Pfam (PF09165) Pfam (PF02921) Pfam (PF00355) In PDB | Sus scrofa (pig) | |
50 | 3F, 3S | Cytochrome b-c1 complex subunit 7 | polymer | 111 | 13587.5 | 2 | UniProt (A0A286ZPR8) Pfam (PF02271) In PDB | Sus scrofa (pig) | |
51 | 3G, 3T | Cytochrome b-c1 complex subunit 8 | polymer | 82 | 9784.3 | 2 | UniProt (A0A8D0SHY6) Pfam (PF02939) In PDB | Sus scrofa (pig) | |
52 | 3H, 3U | Cytochrome b-c1 complex subunit 6, mitochondrial | polymer | 91 | 10685.8 | 2 | UniProt (A0A8D1JI21) Pfam (PF02320) In PDB | Sus scrofa (pig) | |
53 | 3J, 3W | Ubiquinol-cytochrome c reductase complex 7.2 kDa protein | polymer | 64 | 7412.5 | 2 | UniProt (A0A8D1J3N6) Pfam (PF05365) In PDB | Sus scrofa (pig) | cytochrome b-c1 complex subunit 9 |
54 | 3X, 3Y | Cytochrome b-c1 complex subunit 10 | polymer | 56 | 6560.7 | 2 | UniProt (F1SDI2) Pfam (PF08997) In PDB | Sus scrofa (pig) | |
55 | 4A | Cytochrome c oxidase subunit 1 | polymer | 514 | 56992.7 | 1 | UniProt (O79876) Pfam (PF00115) In PDB | Sus scrofa (pig) | |
56 | 4B | Cytochrome c oxidase subunit 2 | polymer | 227 | 26130.5 | 1 | UniProt (P50667) Pfam (PF02790) Pfam (PF00116) In PDB | Sus scrofa (pig) | Cytochrome c oxidase polypeptide II |
57 | 4C | Cytochrome c oxidase subunit 3 | polymer | 261 | 29753.4 | 1 | UniProt (Q35916) Pfam (PF00510) In PDB | Sus scrofa (pig) | |
58 | 4D | Cytochrome c oxidase subunit 4 | polymer | 169 | 19670.7 | 1 | UniProt (A0A4X1T8J9) Pfam (PF02936) In PDB | Sus scrofa (pig) | |
59 | 4E | Cytochrome c oxidase subunit 5A, mitochondrial | polymer | 152 | 16771.2 | 1 | UniProt (F1SJ34) Pfam (PF02284) In PDB | Sus scrofa (pig) | |
60 | 4F | Cytochrome c oxidase subunit 5B, mitochondrial | polymer | 129 | 13801.8 | 1 | UniProt (Q5S3G4) Pfam (PF01215) In PDB | Sus scrofa (pig) | |
61 | 4G | Cytochrome c oxidase subunit 6A2 | polymer | 97 | 10876.4 | 1 | UniProt (A0A287AEB7) Pfam (PF02046) In PDB | Sus scrofa (pig) | |
62 | 4H | Cytochrome c oxidase subunit 6B1 | polymer | 86 | 10204.5 | 1 | UniProt (A1XQT1) Pfam (PF02297) In PDB | Sus scrofa (pig) | |
63 | 4I | Cytochrome c oxidase subunit 6C | polymer | 75 | 8617.1 | 1 | UniProt (A0A4X1TXH1) Pfam (PF02937) In PDB | Sus scrofa (pig) | |
64 | 4J | Cytochrome c oxidase subunit 7A1, mitochondrial | polymer | 80 | 9028.5 | 1 | UniProt (Q8SPJ9) Pfam (PF02238) In PDB | Sus scrofa (pig) | |
65 | 4K | Cytochrome c oxidase subunit 7B | polymer | 80 | 9169.5 | 1 | UniProt (A0A287BJ57) Pfam (PF05392) In PDB | Sus scrofa (pig) | |
66 | 4L | Cytochrome c oxidase subunit 7C, mitochondrial | polymer | 63 | 7358.7 | 1 | UniProt (Q1W0Y2) Pfam (PF02935) In PDB | Sus scrofa (pig) | |
67 | 4M | Cytochrome c oxidase subunit 8 | polymer | 70 | 7615.9 | 1 | UniProt (A1XQT4) Pfam (PF02285) In PDB | Sus scrofa (pig) | |
68 | 4N | Cytochrome c oxidase subunit NDUFA4 | polymer | 82 | 9322.8 | 1 | UniProt (A1XQS3) Pfam (PF06522) In PDB | Sus scrofa (pig) | |
69 | 3R, 1M, 1N, 1A, 3A... | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 27 | Chemie (3PE) | |||
70 | 1M, 1q, 3R, 3X, 1A... | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 15 | Chemie (PC1) | |||
71 | 1B, 1F, 1G, 1I | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 6 | Chemie (SF4) | |||
72 | 1E, 3E, 1G, 3R | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 4 | Chemie (FES) | |||
73 | 1F | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 1 | Chemie (FMN) | |||
74 | 1G | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
75 | 1q, 3T, 1N, 3A, 1X... | CARDIOLIPIN | non-polymer | 1464.0 | 15 | Chemie (CDL) | |||
76 | 1O | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
77 | 1O, 4A | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
78 | 1P | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | non-polymer | 745.4 | 1 | Chemie (NDP) | |||
79 | 1R, 4F | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
80 | 1n, 1T | ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate | non-polymer | 584.7 | 2 | Chemie (EHZ) | |||
81 | 1h | N-ACETYLMETHIONINE | non-polymer | 191.2 | 1 | Chemie (AME) | |||
82 | 1l | MYRISTIC ACID | non-polymer | 228.4 | 1 | Chemie (MYR) | |||
83 | 3C, 3P | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
84 | 3D, 3Q | HEME C | non-polymer | 618.5 | 2 | Chemie (HEC) | |||
85 | 4G, 4J, 4A, 4K, 4L... | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | non-polymer | 749.0 | 15 | Chemie (PGV) | |||
86 | 4A | HEME-A | non-polymer | 852.8 | 2 | Chemie (HEA) | |||
87 | 4A | COPPER (II) ION | non-polymer | 63.5 | 1 | Chemie (CU) | |||
88 | 4A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
89 | 4B | DINUCLEAR COPPER ION | non-polymer | 127.1 | 1 | Chemie (CUA) | |||
90 | 4B | (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE | non-polymer | 759.1 | 1 | Chemie (PSC) | |||
91 | 4G | (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE | non-polymer | 768.1 | 2 | Chemie (PEK) | |||
92 | 4H | PHOSPHATE ION | non-polymer | 95.0 | 1 | Chemie (PO4) | |||
93 | water | water | 18.0 | 6327 | Chemie (HOH) |
Sequence modifications
1C: -35 - 228 (UniProt: A0A286ZNN4)
1D: -32 - 430 (UniProt: A0A8D0QM68)
1f: -48 - 57 (UniProt: A0A8D1IZ33)
1o: 1 - 136 (UniProt: F1SCH1)
PDB | External Database | Details |
---|---|---|
Gln 104 | Arg 140 | conflict |
Gly 154 | Asp 190 | conflict |
PDB | External Database | Details |
---|---|---|
Gly 0 | Glu 33 | conflict |
PDB | External Database | Details |
---|---|---|
Met -77 | - | initiating methionine |
Ala -76 | - | expression tag |
Ala -75 | - | expression tag |
Ala -74 | - | expression tag |
Ile -73 | - | expression tag |
Leu -72 | - | expression tag |
Lys -71 | - | expression tag |
Leu -70 | - | expression tag |
Glu -69 | - | expression tag |
Glu -68 | - | expression tag |
Thr -67 | - | expression tag |
Arg -66 | - | expression tag |
Gly -65 | - | expression tag |
Gly -64 | - | expression tag |
Gly -63 | - | expression tag |
Glu -62 | - | expression tag |
Lys -61 | - | expression tag |
Cys -60 | - | expression tag |
Asp -59 | - | expression tag |
Lys -58 | - | expression tag |
Asn -57 | - | expression tag |
Gln -56 | - | expression tag |
Gly -55 | - | expression tag |
Val -54 | - | expression tag |
Lys -53 | - | expression tag |
Gly -52 | - | expression tag |
Arg -51 | - | expression tag |
Arg -50 | - | expression tag |
Phe -49 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Myr 0 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 81 |
Total formula weight | 1905573.2 | |
Non-Polymers* | Number of molecules | 109 |
Total formula weight | 79603.7 | |
All* | Total formula weight | 1985176.9 |