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8UGH

In-situ structure of typeA supercomplex with lipids in respiratory chain (composite)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(1A)
NADH-ubiquinone oxidoreductase chain 3polymer11513026.51UniProt (O79880)
Pfam (PF00507)
Sus scrofa (pig)NADH dehydrogenase subunit 3
2B
(1B)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrialpolymer25828500.21UniProt (A0A4X1VVS8)
Pfam (PF01058)
Sus scrofa (pig)
3C
(1C)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrialpolymer26430154.31UniProt (A0A286ZNN4)
Pfam (PF00329)
Sus scrofa (pig)
4D
(1D)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrialpolymer46652953.81UniProt (A0A8D1TTB3)
Pfam (PF00346)
Sus scrofa (pig)Complex I-49kD,NADH-ubiquinone oxidoreductase 49 kDa subunit
5E
(1E)
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrialpolymer24927439.51UniProt (A0A4X1VRV3)
Pfam (PF01257)
Sus scrofa (pig)
6F
(1F)
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrialpolymer46450637.81UniProt (A0A4X1SZP7)
Pfam (PF01512)
Pfam (PF22461)
Pfam (PF10589)
Sus scrofa (pig)
7G
(1G)
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrialpolymer72779627.41UniProt (A0A287ARY3)
Pfam (PF10588)
Pfam (PF22117)
Pfam (PF22151)
Pfam (PF00384)
Pfam (PF09326)
Pfam (PF13510)
Sus scrofa (pig)
8H
(1H)
NADH-ubiquinone oxidoreductase chain 1polymer31835619.41UniProt (A0A0U1RS44)
Pfam (PF00146)
Sus scrofa (pig)
9I
(1I)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrialpolymer23927135.01UniProt (A0A286ZUN9)
Pfam (PF12838)
Sus scrofa (pig)
10J
(1J)
NADH-ubiquinone oxidoreductase chain 6polymer17519021.31UniProt (O79882)
Pfam (PF00499)
Sus scrofa (pig)
11K
(1K)
NADH-ubiquinone oxidoreductase chain 4Lpolymer9810855.31UniProt (P56632)
Pfam (PF00420)
Sus scrofa (pig)NADH dehydrogenase subunit 4L
12L
(1L)
NADH-ubiquinone oxidoreductase chain 5polymer60668723.51UniProt (Q9TDR1)
Pfam (PF00662)
Pfam (PF00361)
Pfam (PF06455)
Sus scrofa (pig)NADH dehydrogenase subunit 5
13M
(1M)
NADH-ubiquinone oxidoreductase chain 4polymer45951887.41UniProt (O79881)
Pfam (PF01059)
Pfam (PF00361)
Sus scrofa (pig)NADH dehydrogenase subunit 4
14N
(1N)
NADH-ubiquinone oxidoreductase chain 2polymer34739105.51UniProt (O79875)
Pfam (PF00361)
Pfam (PF06444)
Sus scrofa (pig)NADH dehydrogenase subunit 2
15O
(1O)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrialpolymer35740476.11UniProt (F1SIS9)
Pfam (PF01712)
Sus scrofa (pig)
16P
(1P)
NADH:ubiquinone oxidoreductase subunit A9polymer37742606.31UniProt (A0A4X1ULW2)
Pfam (PF01370)
Sus scrofa (pig)
17Q
(1Q)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrialpolymer17519746.51UniProt (A0A4X1SN37)
Pfam (PF04800)
Sus scrofa (pig)
18R
(1R)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrialpolymer12313349.01UniProt (A0A4X1THU2)
Pfam (PF10276)
Sus scrofa (pig)
19S
(1S)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2polymer9911099.81UniProt (A0A8D1FN21)
Pfam (PF05047)
Sus scrofa (pig)
20T, U
(1T, 1U)
NADH:ubiquinone oxidoreductase subunit AB1polymer15617338.22UniProt (A0A8D1KH26)
Pfam (PF00550)
Sus scrofa (pig)
21V
(1V)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1polymer11613321.61UniProt (A0A8D0UWW0)
Pfam (PF04716)
Sus scrofa (pig)
22W
(1W)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6polymer12814953.31UniProt (A0A480VKQ8)
Pfam (PF05347)
Sus scrofa (pig)
23X
(1X)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8polymer17220064.11UniProt (A0A8D0K6B5)
Pfam (PF06747)
Sus scrofa (pig)
24Y
(1Y)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11polymer14114686.91UniProt (I3LGM4)
Pfam (PF02466)
Sus scrofa (pig)
25Z
(1Z)
NADH:ubiquinone oxidoreductase subunit A13polymer14416911.61UniProt (A0A8D0K655)
Pfam (PF06212)
Sus scrofa (pig)
26AA
(1a)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer708034.41UniProt (A0A8D0TJQ4)
Pfam (PF15879)
Sus scrofa (pig)
27BA
(1b)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3polymer849225.61UniProt (A0A4X1VQ42)
Pfam (PF14987)
Sus scrofa (pig)
28CA
(1c)
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrialpolymer768664.11UniProt (A0A8D0J7S2)
Pfam (PF15088)
Sus scrofa (pig)Complex I-KFYI,NADH-ubiquinone oxidoreductase KFYI subunit
29DA
(1d)
NADH dehydrogenase [ubiquinone] 1 subunit C2polymer12214327.71UniProt (A0A480JRW3)
Pfam (PF06374)
Sus scrofa (pig)
30EA
(1e)
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5polymer10612506.61UniProt (A0A4X1VX77)
Pfam (PF10200)
Sus scrofa (pig)
31FA
(1f)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 [Sus scrofa]polymer13515371.91UniProt (A0A8D1IZ33)
Pfam (PF08040)
Sus scrofa (pig)
32GA
(1g)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrialpolymer15417384.71UniProt (A0A8D1EYI7)
Pfam (PF10183)
Sus scrofa (pig)
33HA
(1h)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrialpolymer18921587.01UniProt (F1SGC6)
Pfam (PF09781)
Sus scrofa (pig)
34IA
(1i)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6polymer12815498.01UniProt (A0A4X1UIV8)
Pfam (PF09782)
Sus scrofa (pig)Complex I-B17,NADH-ubiquinone oxidoreductase B17 subunit
35JA
(1j)
NADH:ubiquinone oxidoreductase subunit B2polymer10511939.41UniProt (A0A8D1G9F4)
Pfam (PF14813)
Sus scrofa (pig)
36KA
(1k)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3polymer9811128.51UniProt (A0A4X1VD84)
Pfam (PF08122)
Sus scrofa (pig)
37LA
(1l)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrialpolymer18621658.41UniProt (B8Y651)
Pfam (PF05821)
Sus scrofa (pig)
38MA
(1m)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4polymer12915117.41UniProt (A0A4X1T6M0)
Pfam (PF07225)
Sus scrofa (pig)
39NA
(1n)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9polymer17921864.91UniProt (K7GSE5)
Pfam (PF05347)
Sus scrofa (pig)
40OA
(1o)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7polymer13716567.01UniProt (F1SCH1)
Pfam (PF05676)
Sus scrofa (pig)Complex I-B18,NADH-ubiquinone oxidoreductase B18 subunit
41PA
(1p)
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10polymer17620944.81UniProt (A0A8D0R7A9)
Pfam (PF10249)
Sus scrofa (pig)
42QA
(1q)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12polymer14517162.41UniProt (F1SQP4)
Pfam (PF05071)
Sus scrofa (pig)
43RA
(1r)
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7polymer11312648.61UniProt (A0A8W4F7N8)
Pfam (PF07347)
Sus scrofa (pig)
44SA
(1s)
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrialpolymer47148217.81UniProt (A0A4X1TE42)
Pfam (PF15880)
Sus scrofa (pig)
45DB, TA
(3A, 3N)
Cytochrome b-c1 complex subunit 1, mitochondrialpolymer48052756.32UniProt (A0A8D0PK14)
Pfam (PF00675)
Pfam (PF05193)
Sus scrofa (pig)
46EB, UA
(3B, 3O)
Cytochrome b-c1 complex subunit 2, mitochondrialpolymer45348262.42UniProt (F1RPD2)
Pfam (PF00675)
Pfam (PF05193)
Sus scrofa (pig)
47FB, VA
(3C, 3P)
Cytochrome bpolymer37942840.72UniProt (Q1HBG9)
Pfam (PF00033)
Pfam (PF00032)
Sus scrofa (pig)
48GB, WA
(3D, 3Q)
Cytochrome c1polymer32635488.92UniProt (A0A287AZF9)
Pfam (PF02167)
Sus scrofa (pig)
49BB, HB, LB, XA
(3E, 3I, 3R, 3V)
Cytochrome b-c1 complex subunit Rieske, mitochondrialpolymer27429492.64UniProt (A0A480EHC1)
Pfam (PF09165)
Pfam (PF02921)
Pfam (PF00355)
Sus scrofa (pig)
50IB, YA
(3F, 3S)
Cytochrome b-c1 complex subunit 7polymer11113587.52UniProt (A0A286ZPR8)
Pfam (PF02271)
Sus scrofa (pig)
51JB, ZA
(3G, 3T)
Cytochrome b-c1 complex subunit 8polymer829784.32UniProt (A0A8D0SHY6)
Pfam (PF02939)
Sus scrofa (pig)
52AB, KB
(3H, 3U)
Cytochrome b-c1 complex subunit 6, mitochondrialpolymer9110685.82UniProt (A0A8D1JI21)
Pfam (PF02320)
Sus scrofa (pig)
53CB, MB
(3J, 3W)
Ubiquinol-cytochrome c reductase complex 7.2 kDa proteinpolymer647412.52UniProt (A0A8D1J3N6)
Pfam (PF05365)
Sus scrofa (pig)cytochrome b-c1 complex subunit 9
54NB, OB
(3X, 3Y)
Cytochrome b-c1 complex subunit 10polymer566560.72UniProt (F1SDI2)
Pfam (PF08997)
Sus scrofa (pig)
55PB
(4A)
Cytochrome c oxidase subunit 1polymer51457020.71UniProt (O79876)
Pfam (PF00115)
Sus scrofa (pig)Cytochrome c oxidase polypeptide I
56QB
(4B)
Cytochrome c oxidase subunit 2polymer22926288.61UniProt (Q69GF7)
Pfam (PF02790)
Pfam (PF00116)
Sus scrofa (pig)
57RB
(4C)
Cytochrome c oxidase subunit 3polymer26129753.41UniProt (Q35916)
Pfam (PF00510)
Sus scrofa (pig)
58SB
(4D)
Cytochrome c oxidase subunit 4polymer16919670.71UniProt (A0A4X1T8J9)
Pfam (PF02936)
Sus scrofa (pig)
59TB
(4E)
Cytochrome c oxidase subunit 5A, mitochondrialpolymer15216771.21UniProt (F1SJ34)
Pfam (PF02284)
Sus scrofa (pig)
60UB
(4F)
Cytochrome c oxidase subunit 5B, mitochondrialpolymer12913801.81UniProt (Q5S3G4)
Pfam (PF01215)
Sus scrofa (pig)
61VB
(4G)
Cytochrome c oxidase subunit 6A2polymer9710876.41UniProt (A0A287AEB7)
Pfam (PF02046)
Sus scrofa (pig)
62WB
(4H)
Cytochrome c oxidase subunit 6B1polymer8610204.51UniProt (A1XQT1)
Pfam (PF02297)
Sus scrofa (pig)
63XB
(4I)
Cytochrome c oxidase subunit 6Cpolymer758617.11UniProt (A0A4X1TXH1)
Pfam (PF02937)
Sus scrofa (pig)
64YB
(4J)
Cytochrome c oxidase subunit 7A1, mitochondrialpolymer809028.51UniProt (Q8SPJ9)
Pfam (PF02238)
Sus scrofa (pig)
65ZB
(4K)
Cytochrome c oxidase subunit 7Bpolymer809169.51UniProt (A0A287BJ57)
Pfam (PF05392)
Sus scrofa (pig)
66AC
(4L)
Cytochrome c oxidase subunit 7C, mitochondrialpolymer637358.71UniProt (Q1W0Y2)
Pfam (PF02935)
Sus scrofa (pig)
67BC
(4M)
Cytochrome c oxidase subunit 8polymer707615.91UniProt (A1XQT4)
Pfam (PF02285)
Sus scrofa (pig)
68CC
(4N)
Cytochrome c oxidase subunit NDUFA4polymer829322.81UniProt (A1XQS3)
Pfam (PF06522)
Sus scrofa (pig)
69AF, AG, AH, AI, AJ...
(1f, 3A, 3G, 3P, 3T...)
1,2-Distearoyl-sn-glycerophosphoethanolaminenon-polymer748.1133Chemie (3PE)
70AD, CI, DE, EC, EE...
(1J, 3P, 1Y, 1A, 1h...)
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEnon-polymer790.120Chemie (PC1)
71GC, NC, OC, PC, WC...
(1B, 1F, 1G, 1I)
IRON/SULFUR CLUSTERnon-polymer351.66Chemie (SF4)
72LC, QC, SI, WG
(1E, 1G, 3R, 3E)
FE2/S2 (INORGANIC) CLUSTERnon-polymer175.84Chemie (FES)
73MC
(1F)
FLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
74RC
(1G)
POTASSIUM IONnon-polymer39.11Chemie (K)
75CF, DK, FD, GI, GJ...
(1g, 4B, 1L, 3P, 3X...)
CARDIOLIPINnon-polymer1464.021Chemie (CDL)
76YC
(1I)
N-ACETYLALANINEnon-polymer131.11Chemie (AYA)
77SD
(1O)
GUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
78TD, WJ
(1O, 4A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
79UD
(1P)
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
80MK, WD
(4F, 1R)
ZINC IONnon-polymer65.42Chemie (ZN)
81UF, XD
(1n, 1T)
~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioatenon-polymer584.72Chemie (EHZ)
82AE
(1Y)
(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATEnon-polymer751.01Chemie (PGT)
83FF
(1h)
N-ACETYLMETHIONINEnon-polymer191.21Chemie (AME)
84LF
(1l)
MYRISTIC ACIDnon-polymer228.41Chemie (MYR)
85BG, CG, UH, VH
(3C, 3P)
PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.54Chemie (HEM)
86OI, SG
(3Q, 3D)
HEME Cnon-polymer618.52Chemie (HEC)
87FJ, PK
(3X, 4G)
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEnon-polymer768.12Chemie (PEK)
88TJ, UJ
(4A)
HEME-Anon-polymer852.82Chemie (HEA)
89VJ
(4A)
COPPER (II) IONnon-polymer63.51Chemie (CU)
90XJ
(4A)
SODIUM IONnon-polymer23.01Chemie (NA)
91AK, BK, FK, GK, HK...
(4A, 4C, 4G, 4J, 4K...)
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEnon-polymer749.013Chemie (PGV)
92CK
(4B)
DINUCLEAR COPPER IONnon-polymer127.11Chemie (CUA)
93EK
(4B)
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEnon-polymer759.11Chemie (PSC)
94RK
(4H)
PHOSPHATE IONnon-polymer95.01Chemie (PO4)
Sequence modifications
1C: -35 - 228 (UniProt: A0A286ZNN4)
PDBExternal DatabaseDetails
Gln 104Arg 140conflict
Gly 154Asp 190conflict
1f: -48 - 57 (UniProt: A0A8D1IZ33)
PDBExternal DatabaseDetails
Met -77-initiating methionine
Ala -76-expression tag
Ala -75-expression tag
Ala -74-expression tag
Ile -73-expression tag
Leu -72-expression tag
Lys -71-expression tag
Leu -70-expression tag
Glu -69-expression tag
Glu -68-expression tag
Thr -67-expression tag
Arg -66-expression tag
Gly -65-expression tag
Gly -64-expression tag
Gly -63-expression tag
Glu -62-expression tag
Lys -61-expression tag
Cys -60-expression tag
Asp -59-expression tag
Lys -58-expression tag
Asn -57-expression tag
Gln -56-expression tag
Gly -55-expression tag
Val -54-expression tag
Lys -53-expression tag
Gly -52-expression tag
Arg -51-expression tag
Arg -50-expression tag
Phe -49-expression tag
1i: 1 - 127 (UniProt: A0A4X1UIV8)
PDBExternal DatabaseDetails
Ace 0-acetylation
1o: 1 - 136 (UniProt: F1SCH1)
PDBExternal DatabaseDetails
Myr 0-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains81
Total formula weight1904656.3
Non-Polymers*Number of molecules226
Total formula weight171017.7
All*Total formula weight2075674.0
*Water molecules are not included.

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