8UES

In-situ complex I, Deactive class01

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (1A)	NADH-ubiquinone oxidoreductase chain 3	polymer	115	13026.5	1	UniProt (O79880) Pfam (PF00507)	Sus scrofa (pig)	NADH dehydrogenase subunit 3
2	B (1B)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	polymer	258	28500.2	1	UniProt (A0A4X1VVS8)	Sus scrofa (pig)
3	C (1C)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	polymer	264	30154.3	1	UniProt (A0A286ZNN4) Pfam (PF00329)	Sus scrofa (pig)
4	D (1D)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	polymer	476	54168.1	1	UniProt (A0A8D0QM68)	Sus scrofa (pig)
5	E (1E)	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	polymer	249	27439.5	1	UniProt (A0A4X1VRV3)	Sus scrofa (pig)
6	F (1F)	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	polymer	464	50637.8	1	UniProt (A0A4X1SZP7) Pfam (PF01512) Pfam (PF22461) Pfam (PF10589)	Sus scrofa (pig)
7	G (1G)	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	polymer	727	79627.4	1	UniProt (A0A287ARY3) Pfam (PF00384) Pfam (PF09326) Pfam (PF13510) Pfam (PF10588) Pfam (PF22117) Pfam (PF22151)	Sus scrofa (pig)
8	H (1H)	NADH-ubiquinone oxidoreductase chain 1	polymer	318	35619.4	1	UniProt (A0A0U1RS44) Pfam (PF00146)	Sus scrofa (pig)
9	I (1I)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	polymer	239	27135.0	1	UniProt (A0A286ZUN9) Pfam (PF12838)	Sus scrofa (pig)
10	J (1J)	NADH-ubiquinone oxidoreductase chain 6	polymer	175	19049.3	1	UniProt (O79882) Pfam (PF00499)	Sus scrofa (pig)	NADH dehydrogenase subunit 6
11	K (1K)	NADH-ubiquinone oxidoreductase chain 4L	polymer	98	10855.3	1	UniProt (P56632) Pfam (PF00420)	Sus scrofa (pig)	NADH dehydrogenase subunit 4L
12	L (1L)	NADH-ubiquinone oxidoreductase chain 5	polymer	606	68723.5	1	UniProt (Q9TDR1) Pfam (PF00662) Pfam (PF00361) Pfam (PF06455)	Sus scrofa (pig)	NADH dehydrogenase subunit 5
13	M (1M)	NADH-ubiquinone oxidoreductase chain 4	polymer	459	51887.4	1	UniProt (O79881) Pfam (PF01059) Pfam (PF00361)	Sus scrofa (pig)	NADH dehydrogenase subunit 4
14	N (1N)	NADH-ubiquinone oxidoreductase chain 2	polymer	347	39105.5	1	UniProt (O79875) Pfam (PF00361) Pfam (PF06444)	Sus scrofa (pig)	NADH dehydrogenase subunit 2
15	O (1O)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	polymer	357	40476.1	1	UniProt (F1SIS9) Pfam (PF01712)	Sus scrofa (pig)
16	P (1P)	NADH:ubiquinone oxidoreductase subunit A9	polymer	377	42606.3	1	UniProt (A0A4X1ULW2)	Sus scrofa (pig)
17	Q (1Q)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial	polymer	175	19746.5	1	UniProt (A0A4X1SN37) Pfam (PF04800)	Sus scrofa (pig)
18	R (1R)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	polymer	123	13349.0	1	UniProt (A0A4X1THU2)	Sus scrofa (pig)
19	S (1S)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	polymer	99	11099.8	1	UniProt (A0A8D1FN21)	Sus scrofa (pig)
20	T, U (1T, 1U)	NADH:ubiquinone oxidoreductase subunit AB1	polymer	156	17338.2	2	UniProt (A0A8D1KH26)	Sus scrofa (pig)
21	V (1V)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 isoform X1	polymer	116	13321.6	1	UniProt (A0A8D0UWW0)	Sus scrofa (pig)
22	W (1W)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	polymer	128	14953.3	1	UniProt (A0A480VKQ8)	Sus scrofa (pig)
23	X (1X)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	polymer	172	20064.1	1	UniProt (A0A8D0K6B5)	Sus scrofa (pig)
24	Y (1Y)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11	polymer	141	14686.9	1	UniProt (I3LGM4) Pfam (PF02466)	Sus scrofa (pig)
25	Z (1Z)	NADH:ubiquinone oxidoreductase subunit A13	polymer	144	16911.6	1	UniProt (A0A8D0K655)	Sus scrofa (pig)
26	AA (1a)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1	polymer	70	8034.4	1	UniProt (A0A8D0TJQ4)	Sus scrofa (pig)
27	BA (1b)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3	polymer	84	9225.6	1	UniProt (A0A4X1VQ42)	Sus scrofa (pig)
28	CA (1c)	NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial	polymer	76	8664.1	1	UniProt (A0A8D1EYQ2)	Sus scrofa (pig)
29	DA (1d)	NADH dehydrogenase [ubiquinone] 1 subunit C2	polymer	123	14353.7	1	UniProt (A0A480JRW3) Pfam (PF06374)	Sus scrofa (pig)
30	EA (1e)	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	polymer	106	12506.6	1	UniProt (A0A4X1VX77)	Sus scrofa (pig)
31	FA (1f)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 [Sus scrofa]	polymer	135	15371.9	1	UniProt (A0A8D1IZ33)	Sus scrofa (pig)
32	GA (1g)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	polymer	154	17384.7	1	UniProt (A0A8D1EYI7)	Sus scrofa (pig)
33	HA (1h)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	polymer	189	21587.0	1	UniProt (F1SGC6) Pfam (PF09781)	Sus scrofa (pig)
34	IA (1i)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	polymer	128	15645.2	1	UniProt (A0A4X1UIV8)	Sus scrofa (pig)
35	JA (1j)	NADH:ubiquinone oxidoreductase subunit B2	polymer	105	11939.4	1	UniProt (A0A8D1G9F4)	Sus scrofa (pig)
36	KA (1k)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3	polymer	98	11128.5	1	UniProt (A0A4X1VD84) Pfam (PF08122)	Sus scrofa (pig)
37	LA (1l)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	polymer	186	21658.4	1	UniProt (B8Y651)	Sus scrofa (pig)
38	MA (1m)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4	polymer	129	15117.4	1	UniProt (A0A4X1T6M0) Pfam (PF07225)	Sus scrofa (pig)
39	NA (1n)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	polymer	179	21864.9	1	UniProt (K7GSE5) Pfam (PF05347)	Sus scrofa (pig)
40	OA (1o)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	polymer	137	16487.9	1	UniProt (F1SCH1) Pfam (PF05676)	Sus scrofa (pig)
41	PA (1p)	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	polymer	176	20944.8	1	UniProt (A0A8D0R7A9)	Sus scrofa (pig)
42	QA (1q)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	polymer	145	17162.4	1	UniProt (F1SQP4) Pfam (PF05071)	Sus scrofa (pig)
43	RA (1r)	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7	polymer	114	12674.6	1	UniProt (A0A8W4F7N8) Pfam (PF07347)	Sus scrofa (pig)	Complex I-B14.5a,NADH-ubiquinone oxidoreductase subunit B14.5a
44	SA (1s)	NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial	polymer	471	48217.8	1	UniProt (A0A4X1TE42)	Sus scrofa (pig)
45	HB, JB, KB, SB, TA... (1L, 1N, 1Y, 1A)	1,2-Distearoyl-sn-glycerophosphoethanolamine	non-polymer		748.1	6	Chemie (3PE)
46	CB, DB, UA, XA, YA... (1I, 1B, 1F, 1G)	IRON/SULFUR CLUSTER	non-polymer		351.6	6	Chemie (SF4)
47	AB, VA (1G, 1E)	FE2/S2 (INORGANIC) CLUSTER	non-polymer		175.8	2	Chemie (FES)
48	WA (1F)	FLAVIN MONONUCLEOTIDE	non-polymer		456.3	1	Chemie (FMN) PubChem (710) PubChem (23585816) PubChem (8965) PubChem (51435500) PubChem (51435503) PubChem (643976) PubChem (5702760) PubChem (7048779) PubChem (7048781) PubChem (15559251)
49	BB (1G)	POTASSIUM ION	non-polymer		39.1	1	Chemie (K) PubChem (813)
50	EB, FB, GB, IB, UB (1I, 1J, 1L, 1f)	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE	non-polymer		790.1	5	Chemie (PC1) PubChem (65146) PubChem (94190) PubChem (10417837)
51	LB, XB (1N, 1q)	CARDIOLIPIN	non-polymer		1464.0	2	Chemie (CDL) PubChem (17753886) PubChem (5287898)
52	MB (1O)	GUANOSINE-5'-TRIPHOSPHATE	non-polymer		523.2	1	Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466)
53	NB (1O)	MAGNESIUM ION	non-polymer		24.3	1	Chemie (MG) PubChem (888)
54	OB (1P)	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	non-polymer		745.4	1	Chemie (NDP)
55	PB (1R)	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
56	QB, WB (1W, 1n)	~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate	non-polymer		584.7	2	Chemie (EHZ) PubChem (71777704) PubChem (137349255) PubChem (163183360)
57	RB (1Y)	(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE	non-polymer		751.0	1	Chemie (PGT) PubChem (25267633) PubChem (449008) PubChem (102447212) PubChem (16040248) PubChem (172432040)
58	VB (1l)	MYRISTIC ACID	non-polymer		228.4	1	Chemie (MYR) PubChem (11005)

Sequence modifications

1C: -35 - 228 (UniProt: A0A286ZNN4)

PDB	External Database	Details
Gln 104	Arg 140	conflict
Gly 154	Asp 190	conflict

1D: -32 - 430 (UniProt: A0A8D0QM68)

PDB	External Database	Details
Gly 0	Glu 33	conflict

1d: -1 - 120 (UniProt: A0A480JRW3)

PDB	External Database	Details
Ace -2	-	acetylation

1f: -48 - 57 (UniProt: A0A8D1IZ33)

PDB	External Database	Details
Met -77	-	initiating methionine
Ala -76	-	expression tag
Ala -75	-	expression tag
Ala -74	-	expression tag
Ile -73	-	expression tag
Leu -72	-	expression tag
Lys -71	-	expression tag
Leu -70	-	expression tag
Glu -69	-	expression tag
Glu -68	-	expression tag
Thr -67	-	expression tag
Arg -66	-	expression tag
Gly -65	-	expression tag
Gly -64	-	expression tag
Gly -63	-	expression tag
Glu -62	-	expression tag
Lys -61	-	expression tag
Cys -60	-	expression tag
Asp -59	-	expression tag
Lys -58	-	expression tag
Asn -57	-	expression tag
Gln -56	-	expression tag
Gly -55	-	expression tag
Val -54	-	expression tag
Lys -53	-	expression tag
Gly -52	-	expression tag
Arg -51	-	expression tag
Arg -50	-	expression tag
Phe -49	-	expression tag

1r: -1 - 112 (UniProt: A0A8W4F7N8)

PDB	External Database	Details
Ace 0	-	insertion

Contents of the asymmetric unit

Polymers	Number of chains	45
	Total formula weight	1097790.1
Non-Polymers*	Number of molecules	31
	Total formula weight	17831.2
All*	Total formula weight	1115621.4

*Water molecules are not included.