8TOF
Rpd3S bound to an H3K36Cme3 modified nucleosome
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Transcriptional regulatory protein SIN3 | polymer | 1536 | 175047.3 | 1 | UniProt (P22579) Pfam (PF02671) Pfam (PF08295) Pfam (PF16879) | Saccharomyces cerevisiae (baker's yeast) | |
| 2 | B (B) | Histone deacetylase RPD3 | polymer | 433 | 48962.0 | 1 | UniProt (P32561) Pfam (PF00850) | Saccharomyces cerevisiae (baker's yeast) | Transcriptional regulatory protein RPD3 |
| 3 | C, D (D, E) | Chromatin modification-related protein EAF3 | polymer | 401 | 45266.4 | 2 | UniProt (Q12432) Pfam (PF11717) Pfam (PF22732) Pfam (PF05712) | Saccharomyces cerevisiae (baker's yeast) | |
| 4 | E, F (F, G) | Transcriptional regulatory protein RCO1 | polymer | 684 | 78951.3 | 2 | UniProt (Q04779) Pfam (PF00628) | Saccharomyces cerevisiae (baker's yeast) | |
| 5 | G (H) | Rco1 | polymer | 5 | 515.6 | 1 | Saccharomyces cerevisiae | ||
| 6 | H (N) | DNA (176-MER) | polymer | 206 | 63931.6 | 1 | synthetic construct | ||
| 7 | I (T) | DNA (176-MER) | polymer | 215 | 66097.2 | 1 | synthetic construct | ||
| 8 | J, N (a, e) | Histone H3 | polymer | 136 | 15495.2 | 2 | UniProt (A0A310TTQ1) Pfam (PF00125) UniProt (by SIFTS) (P02302) | Xenopus laevis (African clawed frog) | |
| 9 | K, O (b, f) | Histone H4 | polymer | 103 | 11394.4 | 2 | UniProt (A0A8J1LTD2) Pfam (PF15511) UniProt (by SIFTS) (P62799) | Xenopus laevis (African clawed frog) | |
| 10 | L, P (c, g) | Histone H2A | polymer | 130 | 14109.4 | 2 | UniProt (Q6AZJ8) Pfam (PF00125) Pfam (PF16211) UniProt (by SIFTS) (P06897) | Xenopus laevis (African clawed frog) | |
| 11 | M, Q (d, h) | Histone H2B 1.1 | polymer | 123 | 13655.9 | 2 | UniProt (P02281) Pfam (PF00125) | Xenopus laevis (African clawed frog) | H2B1.1 |
| 12 | R (x) | histone N-terminal tail | polymer | 7 | 657.8 | 1 | Xenopus laevis | ||
| 13 | S, T, U, V, W (B, G) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) |
Sequence modifications
d, h: 1 - 122 (UniProt: P02281)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| Thr 29 | Ser 33 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 712957.0 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 327.0 | |
| All* | Total formula weight | 713284.1 |
