8THF
SARS-CoV-2 BA.1 S-6P-no-RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike protein S1,Spike glycoprotein | polymer | 1037 | 114876.4 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 12 | In PDB GlyTouCan (G42666HT) | |||
| 3 | C, A, B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) |
Sequence modifications
A, B, C: 14 - 324 (UniProt: P0DTC2)
A, B, C: 328 - 1014 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Val 67 | Ala 67 | conflict |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Ile 93 | Thr 95 | conflict |
| - | Gly 142 | deletion |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| Asp 140 | Tyr 145 | conflict |
| Ile 206 | - | insertion |
| Val 207 | - | insertion |
| Arg 208 | Asn 211 | conflict |
| Glu 209 | Leu 212 | conflict |
| Pro 210 | Val 213 | conflict |
| Glu 211 | Arg 214 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 325 | - | linker |
| Phe 326 | - | linker |
| Pro 327 | - | linker |
| Lys 350 | Thr 547 | conflict |
| Gly 417 | Asp 614 | conflict |
| Tyr 458 | His 655 | conflict |
| Lys 482 | Asn 679 | conflict |
| His 484 | Pro 681 | conflict |
| Gly 485 | Arg 682 | conflict |
| Ser 486 | Arg 683 | conflict |
| Ser 488 | Arg 685 | conflict |
| Lys 567 | Asn 764 | conflict |
| Tyr 599 | Asp 796 | conflict |
| Pro 620 | Phe 817 | conflict |
| Lys 659 | Asn 856 | conflict |
| Pro 695 | Ala 892 | conflict |
| Pro 702 | Ala 899 | conflict |
| Pro 745 | Ala 942 | conflict |
| His 757 | Gln 954 | conflict |
| Lys 772 | Asn 969 | conflict |
| Phe 784 | Leu 981 | conflict |
| Pro 789 | Lys 986 | conflict |
| Pro 790 | Val 987 | conflict |
| Gly 1015 | - | expression tag |
| Ser 1016 | - | expression tag |
| Gly 1017 | - | expression tag |
| Tyr 1018 | - | expression tag |
| Ile 1019 | - | expression tag |
| Pro 1020 | - | expression tag |
| Glu 1021 | - | expression tag |
| Ala 1022 | - | expression tag |
| Pro 1023 | - | expression tag |
| Arg 1024 | - | expression tag |
| Asp 1025 | - | expression tag |
| Gly 1026 | - | expression tag |
| Gln 1027 | - | expression tag |
| Ala 1028 | - | expression tag |
| Tyr 1029 | - | expression tag |
| Val 1030 | - | expression tag |
| Arg 1031 | - | expression tag |
| Lys 1032 | - | expression tag |
| Asp 1033 | - | expression tag |
| Gly 1034 | - | expression tag |
| Glu 1035 | - | expression tag |
| Trp 1036 | - | expression tag |
| Val 1037 | - | expression tag |
| Leu 1038 | - | expression tag |
| Leu 1039 | - | expression tag |
| Ser 1040 | - | expression tag |
| Thr 1041 | - | expression tag |
| Phe 1042 | - | expression tag |
| Leu 1043 | - | expression tag |
| Gly 1044 | - | expression tag |
| His 1045 | - | expression tag |
| His 1046 | - | expression tag |
| His 1047 | - | expression tag |
| His 1048 | - | expression tag |
| His 1049 | - | expression tag |
| His 1050 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 344629.3 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5092.8 | |
| Non-Polymers* | Number of molecules | 15 |
| Total formula weight | 3318.1 | |
| All* | Total formula weight | 353040.2 |
