8TG4
tRNA 2'-phosphotransferase (Tpt1) from Aeropyrum pernix in complex with ADP-ribose-2"-phosphate and 2'-OH RNA
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Probable RNA 2'-phosphotransferase | polymer | 206 | 23382.0 | 1 | UniProt (Q9YFP5) Pfam (PF01885) In PDB | Aeropyrum pernix | |
2 | C | RNA (5'-R(*UP*GP*UP*A)-3') | polymer | 5 | 1548.0 | 1 | synthetic construct | ||
3 | A | NITRATE ION | non-polymer | 62.0 | 1 | Chemie (NO3) | |||
4 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
5 | A | [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl [(2R,3R,4R,5R)-3,5-dihydroxy-4-(phosphonooxy)oxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name) | non-polymer | 639.3 | 1 | Chemie (9SO) | |||
6 | A | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) | |||
7 | A | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
8 | water | water | 18.0 | 145 | Chemie (HOH) |
Sequence modifications
A: 1 - 186 (UniProt: Q9YFP5)
PDB | External Database | Details |
---|---|---|
Met -19 | - | expression tag |
Gly -18 | - | expression tag |
Ser -17 | - | expression tag |
Ser -16 | - | expression tag |
His -15 | - | expression tag |
His -14 | - | expression tag |
His -13 | - | expression tag |
His -12 | - | expression tag |
His -11 | - | expression tag |
His -10 | - | expression tag |
Ser -9 | - | expression tag |
Ser -8 | - | expression tag |
Gly -7 | - | expression tag |
Leu -6 | - | expression tag |
Val -5 | - | expression tag |
Pro -4 | - | expression tag |
Arg -3 | - | expression tag |
Gly -2 | - | expression tag |
Ser -1 | - | expression tag |
His 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 24930.0 | |
Non-Polymers* | Number of molecules | 9 |
Total formula weight | 990.7 | |
All* | Total formula weight | 25920.6 |