8TC5
Cryo-EM Structure of Spike Glycoprotein from Civet Coronavirus SZ3 in Closed Conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1106 | 122511.1 | 3 | Pfam (PF16451) Pfam (PF09408) Pfam (PF01601) UniProt (by SIFTS) (P59594) | Civet SARS CoV SZ3/2003 | |
| 2 | D, E, F, I, IA... (D, E, F, 5, f...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 7 | In PDB GlyTouCan (G42666HT) | |||
| 3 | BA, EA, FA, G, H... (Y, b, c, p, 2...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 11 | In PDB GlyTouCan (G21290RB) | |||
| 4 | DA, GA, J, JA, M... (a, d, G, g, J...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 732.7 | 9 | In PDB GlyTouCan (G32152BH) | |||
| 5 | AA, HA, K, MA, O... (X, e, H, j, L...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 6 | In PDB GlyTouCan (G15407YE) | |||
| 6 | CA, KA, N, OA, Q... (Z, h, K, l, N...) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 894.8 | 6 | In PDB GlyTouCan (G00395TQ) | |||
| 7 | AB, BB, QA, SA, TA... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 9 | Chemie (NAG) | |||
| 8 | RA, VA, YA (A, B) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) PubChem (3931) PubChem (87172266) PubChem (5282457) PubChem (5282797) PubChem (5282798) PubChem (91418992) PubChem (5280450) PubChem (129844353) PubChem (151410014) | |||
| 9 | CB, DB, EB (A, B, C) | water | water | 18.0 | 352 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 367533.3 | |
| Branched | Number of molecules | 39 |
| Total formula weight | 24729.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 2832.2 | |
| All* | Total formula weight | 395094.6 |
