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8TBD

Sequence specific (AATT) orientation of Hoechst molecules at a unique minor groove binding site (position2) within a self-assembled 3D DNA lattice (4x5)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*TP*GP*AP*CP*GP*AP*CP*AP*AP*TP*TP*A)-3')polymer216465.21synthetic construct
2B
(B)
DNA (5'-D(P*CP*GP*TP*CP*A)-3')polymer51480.01synthetic construct
3C
(C)
DNA (5'-D(*TP*CP*TP*AP*AP*TP*TP*GP*T*(HT1))-3')polymer92720.81synthetic construct
4D
(D)
DNA (5'-D(P*GP*GP*TP*CP*TP*GP*C)-3')polymer72129.41synthetic construct
5E, F, G, J
(A, B, C)
CACODYLATE IONnon-polymer137.04Chemie (CAC)
6H
(B)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
7I
(C)
2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLEnon-polymer452.61Chemie (HT1)
8K, L
(A, C)
waterwater18.03Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight12795.4
Non-Polymers*Number of molecules6
Total formula weight1024.8
All*Total formula weight13820.3
*Water molecules are not included.

246905

PDB entries from 2025-12-31

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