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8TB3

Sequence specific (AATT) orientation of DAPI molecules at a unique minor groove binding site (position1) within a self-assembled 3D DNA lattice (4x5)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA (5'-D(*GP*AP*CP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3')polymer216416.21synthetic construct
2B
(B)
DNA (5'-D(P*CP*GP*TP*CP*A)-3')polymer51480.01synthetic construct
3C
(C)
DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*T)-3')polymer92761.81synthetic construct
4D
(D)
DNA (5'-D(P*GP*CP*AP*AP*TP*TP*G*(DAP))-3')polymer72137.41synthetic construct
5E
(D)
6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLEnon-polymer277.31Chemie (DAP)
6F, G
(C, D)
waterwater18.02Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight12795.4
Non-Polymers*Number of molecules1
Total formula weight277.3
All*Total formula weight13072.8
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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