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8T9F

Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(K)
Histone-lysine N-methyltransferase KMT5Bpolymer39344690.21UniProt (Q4FZB7)
Pfam (PF00856)
Homo sapiens (human)Lysine N-methyltransferase 5B,Lysine-specific methyltransferase 5B,Suppressor of variegation 4-20 homolog 1,Su(var)4-20 homolog 1,Suv4-20h1,[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B,[histone H4]-lysine20 N-methyltransferase KMT5B
2B
(I)
DNA (122-MER)polymer14644824.61Escherichia coli 'BL21-Gold(DE3)pLysS AG'
3C
(J)
DNA (122-MER)polymer14645304.91Escherichia coli 'BL21-Gold(DE3)pLysS AG'
4D, F
(B, F)
Histone H4polymer10311396.42UniProt (A0A8J1LTD2)
Pfam (PF15511)
UniProt (by SIFTS) (P62799)
Xenopus laevis (African clawed frog)
5E, I
(A, E)
Histone H3.2polymer13515303.92UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)Histone H3
6G, J
(G, C)
Histone H2A.Zpolymer12813581.82UniProt (P0C0S5)
Pfam (PF00125)
Pfam (PF16211)
Homo sapiens (human)H2A/z
7H, K
(H, D)
Histone H2B 1.1polymer12313655.92UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
8L
(K)
S-ADENOSYLMETHIONINEnon-polymer398.41Chemie (SAM)
Sequence modifications
B, F: 0 - 102 (UniProt: A0A8J1LTD2)
PDBExternal DatabaseDetails
Met 20Lys 34conflict
A, E: 1 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103variant
H, D: 5 - 126 (UniProt: P02281)
PDBExternal DatabaseDetails
Met 4-initiating methionine
Thr 33Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains11
Total formula weight242695.8
Non-Polymers*Number of molecules1
Total formula weight398.4
All*Total formula weight243094.3
*Water molecules are not included.

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PDB entries from 2024-10-30

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