8T9F
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A (K) | Histone-lysine N-methyltransferase KMT5B | polymer | 393 | 44690.2 | 1 | UniProt (Q4FZB7) Pfam (PF00856) | Homo sapiens (human) | Lysine N-methyltransferase 5B,Lysine-specific methyltransferase 5B,Suppressor of variegation 4-20 homolog 1,Su(var)4-20 homolog 1,Suv4-20h1,[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B,[histone H4]-lysine20 N-methyltransferase KMT5B |
2 | B (I) | DNA (122-MER) | polymer | 146 | 44824.6 | 1 | Escherichia coli 'BL21-Gold(DE3)pLysS AG' | ||
3 | C (J) | DNA (122-MER) | polymer | 146 | 45304.9 | 1 | Escherichia coli 'BL21-Gold(DE3)pLysS AG' | ||
4 | D, F (B, F) | Histone H4 | polymer | 103 | 11396.4 | 2 | UniProt (A0A8J1LTD2) Pfam (PF15511) UniProt (by SIFTS) (P62799) | Xenopus laevis (African clawed frog) | |
5 | E, I (A, E) | Histone H3.2 | polymer | 135 | 15303.9 | 2 | UniProt (P84233) Pfam (PF00125) | Xenopus laevis (African clawed frog) | Histone H3 |
6 | G, J (G, C) | Histone H2A.Z | polymer | 128 | 13581.8 | 2 | UniProt (P0C0S5) Pfam (PF00125) Pfam (PF16211) | Homo sapiens (human) | H2A/z |
7 | H, K (H, D) | Histone H2B 1.1 | polymer | 123 | 13655.9 | 2 | UniProt (P02281) Pfam (PF00125) | Xenopus laevis (African clawed frog) | H2B1.1 |
8 | L (K) | S-ADENOSYLMETHIONINE | non-polymer | 398.4 | 1 | Chemie (SAM) |
Sequence modifications
B, F: 0 - 102 (UniProt: A0A8J1LTD2)
A, E: 1 - 135 (UniProt: P84233)
H, D: 5 - 126 (UniProt: P02281)
PDB | External Database | Details |
---|---|---|
Met 20 | Lys 34 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 102 | Gly 103 | variant |
PDB | External Database | Details |
---|---|---|
Met 4 | - | initiating methionine |
Thr 33 | Ser 33 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 11 |
Total formula weight | 242695.8 | |
Non-Polymers* | Number of molecules | 1 |
Total formula weight | 398.4 | |
All* | Total formula weight | 243094.3 |