8T5D
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 0 | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (A0A828UBL8) Pfam (PF01783) In PDB | Escherichia coli | |
2 | 1 | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (A0A891SPC3) In PDB | Escherichia coli | |
3 | 2 | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) In PDB | Escherichia coli | |
4 | 3 | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (E9XJC8) In PDB | Escherichia coli | |
5 | 4 | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) Pfam (PF00444) In PDB | Escherichia coli | |
6 | A | 5S RNA | polymer | 117 | 37848.6 | 1 | GenBank (1845258627) | Escherichia coli | |
7 | B | 23S RNA | polymer | 2903 | 941306.2 | 1 | GenBank (937521852) | Escherichia coli | |
8 | C | 50S ribosomal protein L2 | polymer | 272 | 29792.4 | 1 | UniProt (A0A1X3JB59) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | |
9 | D | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli | Large ribosomal subunit protein uL3 |
10 | E | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (A1AGK6) Pfam (PF00573) In PDB | Escherichia coli | |
11 | F | 50S ribosomal protein L5 | polymer | 178 | 20202.4 | 1 | UniProt (D6IEK6) In PDB | Escherichia coli | |
12 | G | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (A0A8E0IYC4) In PDB | Escherichia coli | |
13 | J | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (S1EW51) In PDB | Escherichia coli | |
14 | K | 50S ribosomal protein L14 | polymer | 122 | 13433.9 | 1 | UniProt (C3SQZ2) Pfam (PF00238) In PDB | Escherichia coli | |
15 | L | 50S ribosomal protein L15 | polymer | 143 | 14877.3 | 1 | UniProt (A0A037Y8L6) Pfam (PF00828) In PDB | Escherichia coli | |
16 | M | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | Large ribosomal subunit protein uL16 |
17 | N | 50S ribosomal protein L17 | polymer | 121 | 13851.1 | 1 | UniProt (A0A2T1LEK9) Pfam (PF01196) In PDB | Escherichia coli | |
18 | O | 50S ribosomal protein L18 | polymer | 116 | 12663.5 | 1 | UniProt (A0A1X3KXD9) In PDB | Escherichia coli | |
19 | P | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (S1PSA3) Pfam (PF01245) In PDB | Escherichia coli | |
20 | Q | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (L4J8J1) In PDB | Escherichia coli | |
21 | R | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (A0A829CSJ4) In PDB | Escherichia coli | |
22 | S | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli | Large ribosomal subunit protein uL22 |
23 | T | 50S ribosomal protein L23 | polymer | 94 | 10661.6 | 1 | UniProt (S1EUY1) In PDB | Escherichia coli | |
24 | U | 50S ribosomal protein L24 | polymer | 103 | 11208.1 | 1 | UniProt (S1E9P3) In PDB | Escherichia coli | |
25 | V | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) In PDB | Escherichia coli | |
26 | W | 50S ribosomal protein L27 | polymer | 79 | 8476.7 | 1 | UniProt (C3SSG7) Pfam (PF01016) In PDB | Escherichia coli | |
27 | X | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (A0A0E2KZD0) Pfam (PF00830) In PDB | Escherichia coli | |
28 | Y | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D6IEL0) In PDB | Escherichia coli | |
29 | Z | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli | Large ribosomal subunit protein uL30 |
30 | a | 30S ribosomal protein S2 | polymer | 218 | 24253.9 | 1 | UniProt (U9ZNW8) In PDB | Escherichia coli | |
31 | b | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (V0Y888) In PDB | Escherichia coli | |
32 | c | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (C3SR62) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli | |
33 | d | 30S ribosomal protein S5 | polymer | 150 | 15804.3 | 1 | UniProt (F4TL26) In PDB | Escherichia coli | |
34 | e | 30S ribosomal protein S6, non-modified isoform | polymer | 100 | 11669.4 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli | |
35 | f | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli | Small ribosomal subunit protein uS7 |
36 | g | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (A0A828U358) Pfam (PF00410) In PDB | Escherichia coli | |
37 | h | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (V0A2W7) In PDB | Escherichia coli | |
38 | i | 30S ribosomal protein S10 | polymer | 98 | 11197.0 | 1 | UniProt (A0A0H3EQD3) Pfam (PF00338) In PDB | Escherichia coli | |
39 | j | 30S ribosomal protein S11 | polymer | 117 | 12487.2 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli | Small ribosomal subunit protein uS11 |
40 | k | 30S ribosomal protein S12 | polymer | 123 | 13637.0 | 1 | UniProt (I2UHF1) In PDB | Escherichia coli | |
41 | l | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (S1P5F8) Pfam (PF00416) In PDB | Escherichia coli | |
42 | m | 30S ribosomal protein S14 | polymer | 100 | 11489.4 | 1 | UniProt (B7M1M1) Pfam (PF00253) In PDB | Escherichia coli | |
43 | n | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (D7XN21) In PDB | Escherichia coli | |
44 | o | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) Pfam (PF00886) In PDB | Escherichia coli | |
45 | p | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (A0A080IK26) In PDB | Escherichia coli | |
46 | q | 30S ribosomal protein S18 | polymer | 55 | 6466.5 | 1 | UniProt (W1EY92) Pfam (PF01084) In PDB | Escherichia coli | |
47 | r | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (A0A7U9LGZ0) Pfam (PF00203) In PDB | Escherichia coli | |
48 | s | 30S ribosomal protein S20 | polymer | 85 | 9506.2 | 1 | UniProt (C3TRH7) Pfam (PF01649) In PDB | Escherichia coli | |
49 | t | 30S ribosomal protein S21 (Fragment) | polymer | 51 | 6067.1 | 1 | UniProt (A0A5C9AJ78) Pfam (PF01165) In PDB | Escherichia coli | |
50 | u | Transcription termination/antitermination protein NusG | polymer | 59 | 6639.5 | 1 | UniProt (A0A2X1MT45) Pfam (PF00467) In PDB | Escherichia coli | |
51 | v | 16s RNA | polymer | 1539 | 498725.4 | 1 | GenBank (1338015391) | Escherichia coli | |
52 | x | lmRNA | polymer | 12 | 3866.4 | 1 | Bacteriophage sp. | ||
53 | 5 | tRNA | polymer | 77 | 24802.8 | 1 | GenBank (1848934315) | Escherichia coli |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 53 |
Total formula weight | 2120506.7 | |
All* | Total formula weight | 2120506.7 |