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8SVF

BAP1/ASXL1 bound to the H2AK119Ub Nucleosome

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(A, E)
Histone H3.2polymer13615435.12UniProt (P84233)
Pfam (PF00125)
Xenopus laevis (African clawed frog)Histone H3
2B, F
(B, F)
Histone H4polymer10311394.42UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2A type 1polymer13014093.42UniProt (P06897)
Pfam (PF00125)
Pfam (PF16211)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2B 1.1polymer12613979.32UniProt (P02281)
Pfam (PF00125)
Xenopus laevis (African clawed frog)H2B1.1
5I
(I)
DNA/RNA (187-MER)polymer18758568.81synthetic construct
6J
(J)
DNA/RNA (327-MER)polymer327102866.51synthetic construct
7K
(K)
Ubiquitin carboxyl-terminal hydrolase BAP1polymer72980472.61UniProt (Q92560)
Pfam (PF01088)
Pfam (PF18031)
Homo sapiens (human)BRCA1-associated protein 1,Cerebral protein 6
8L
(L)
Polycomb group protein ASXL1polymer1541165635.21UniProt (Q8IXJ9)
Pfam (PF13922)
Pfam (PF05066)
Pfam (PF13919)
Homo sapiensAdditional sex combs-like protein 1
9M
(M)
Ubiquitinpolymer768576.81UniProt (P0CG48)
Pfam (PF00240)
Homo sapiens (human)
Sequence modifications
A, E: 0 - 135 (UniProt: P84233)
PDBExternal DatabaseDetails
Ala 102Gly 103engineered mutation
C, G: 0 - 129 (UniProt: P06897)
PDBExternal DatabaseDetails
Arg 99Gly 100engineered mutation
D, H: -3 - 122 (UniProt: P02281)
PDBExternal DatabaseDetails
Thr 29Ser 33engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains13
Total formula weight525924.5
All*Total formula weight525924.5
*Water molecules are not included.

238268

PDB entries from 2025-07-02

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