8SVF
BAP1/ASXL1 bound to the H2AK119Ub Nucleosome
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E (A, E) | Histone H3.2 | polymer | 136 | 15435.1 | 2 | UniProt (P84233) Pfam (PF00125) | Xenopus laevis (African clawed frog) | Histone H3 |
2 | B, F (B, F) | Histone H4 | polymer | 103 | 11394.4 | 2 | UniProt (P62799) Pfam (PF15511) | Xenopus laevis (African clawed frog) | |
3 | C, G (C, G) | Histone H2A type 1 | polymer | 130 | 14093.4 | 2 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) | Xenopus laevis (African clawed frog) | |
4 | D, H (D, H) | Histone H2B 1.1 | polymer | 126 | 13979.3 | 2 | UniProt (P02281) Pfam (PF00125) | Xenopus laevis (African clawed frog) | H2B1.1 |
5 | I (I) | DNA/RNA (187-MER) | polymer | 187 | 58568.8 | 1 | synthetic construct | ||
6 | J (J) | DNA/RNA (327-MER) | polymer | 327 | 102866.5 | 1 | synthetic construct | ||
7 | K (K) | Ubiquitin carboxyl-terminal hydrolase BAP1 | polymer | 729 | 80472.6 | 1 | UniProt (Q92560) Pfam (PF01088) Pfam (PF18031) | Homo sapiens (human) | BRCA1-associated protein 1,Cerebral protein 6 |
8 | L (L) | Polycomb group protein ASXL1 | polymer | 1541 | 165635.2 | 1 | UniProt (Q8IXJ9) Pfam (PF13922) Pfam (PF05066) Pfam (PF13919) | Homo sapiens | Additional sex combs-like protein 1 |
9 | M (M) | Ubiquitin | polymer | 76 | 8576.8 | 1 | UniProt (P0CG48) Pfam (PF00240) | Homo sapiens (human) |
Sequence modifications
A, E: 0 - 135 (UniProt: P84233)
C, G: 0 - 129 (UniProt: P06897)
D, H: -3 - 122 (UniProt: P02281)
PDB | External Database | Details |
---|---|---|
Ala 102 | Gly 103 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Arg 99 | Gly 100 | engineered mutation |
PDB | External Database | Details |
---|---|---|
Thr 29 | Ser 33 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 13 |
Total formula weight | 525924.5 | |
All* | Total formula weight | 525924.5 |