8SPU
Structure of ESRRB nucleosome bound OCT4 at site c
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | J | DNA (168-MER) | polymer | 168 | 51224.5 | 1 | GenBank (11094662) | Homo sapiens | |
2 | I | DNA (168-MER) | polymer | 168 | 52499.6 | 1 | GenBank (11094662) | Homo sapiens | |
3 | L | Maltodextrin-binding protein,POU domain, class 5, transcription factor 1 | polymer | 550 | 61285.7 | 1 | UniProt (A0A376KDN7) UniProt (Q01860) Pfam (PF00157) Pfam (PF00046) In PDB | Homo sapiens (human) | Octamer-binding protein 3,Oct-3,Octamer-binding protein 4,Oct-4,Octamer-binding transcription factor 3,OTF-3 |
4 | E, A | Histone H3.1 | polymer | 136 | 15437.2 | 2 | UniProt (P68431) Pfam (PF00125) In PDB | Homo sapiens (human) | Histone H3/a,Histone H3/b,Histone H3/c,Histone H3/d,Histone H3/f,Histone H3/h,Histone H3/i,Histone H3/j,Histone H3/k,Histone H3/l |
5 | F, B | Histone H4 | polymer | 103 | 11394.4 | 2 | UniProt (P62805) Pfam (PF15511) In PDB | Homo sapiens (human) | |
6 | G, C | Histone H2A type 2-C | polymer | 129 | 14017.4 | 2 | UniProt (Q16777) Pfam (PF00125) Pfam (PF16211) In PDB | Homo sapiens (human) | H2A-clustered histone 20,Histone H2A-GL101,Histone H2A/q |
7 | H, D | Histone H2B type 2-E | polymer | 126 | 13951.2 | 2 | UniProt (Q16778) Pfam (PF00125) In PDB | Homo sapiens (human) | H2B-clustered histone 21,Histone H2B-GL105,Histone H2B.q,H2B/q |
8 | N, K | ScFv | polymer | 265 | 29030.1 | 2 | Escherichia coli |
Sequence modifications
L: -248 - 113 (UniProt: A0A376KDN7)
L: 138 - 290 (UniProt: Q01860)
PDB | External Database | Details |
---|---|---|
Met -251 | - | initiating methionine |
Lys -250 | - | expression tag |
Glu -249 | - | expression tag |
Ala 114 | - | linker |
Ala 115 | - | linker |
Ala 116 | - | linker |
Gln 117 | - | linker |
Thr 118 | - | linker |
Asn 119 | - | linker |
Ala 120 | - | linker |
Gly 121 | - | linker |
Ser 122 | - | linker |
Glu 123 | - | linker |
Asn 124 | - | linker |
Leu 125 | - | linker |
Tyr 126 | - | linker |
Phe 127 | - | linker |
Gln 128 | - | linker |
Gly 129 | - | linker |
Ser 130 | - | linker |
Val 131 | - | linker |
Asp 132 | - | linker |
Ser 133 | - | linker |
Ala 134 | - | linker |
Ala 135 | - | linker |
Ala 136 | - | linker |
Ser 137 | - | linker |
PDB | External Database | Details |
---|---|---|
Glu 291 | - | expression tag |
Phe 292 | - | expression tag |
His 293 | - | expression tag |
His 294 | - | expression tag |
His 295 | - | expression tag |
His 296 | - | expression tag |
His 297 | - | expression tag |
His 298 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 13 |
Total formula weight | 332670.6 | |
All* | Total formula weight | 332670.6 |