8SNB
atomic model of sea urchin sperm doublet microtubule (48-nm periodicity)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (1A, 1B) | CFAP96(C4orf47) | polymer | 309 | 33406.3 | 2 | UniProt (A0A7M7TH36) Pfam (PF15239) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 2 | C, D, E, F (1E, 1F, 1G, 1H) | Coiled-coil domain-containing protein 105 | polymer | 448 | 49945.5 | 4 | UniProt (A0A7M7RBY5) Pfam (PF03148) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 3 | DA, EA, FA, G, GA... (1K, 1L, 1M, 1v, 1w...) | Coiled-coil domain-containing protein 81 | polymer | 696 | 79691.8 | 9 | UniProt (A0A7M7PGM9) Pfam (PF14908) Pfam (PF18289) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 4 | J, K (1P, 1Q) | FAM166C | polymer | 204 | 23728.4 | 2 | UniProt (A0A7M7RHZ2) Pfam (PF10629) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 5 | L, M, N, O (1T, 1U, 1V, 1W) | Protein FAM166B | polymer | 429 | 48701.2 | 4 | UniProt (A0A7M7HL38) Pfam (PF10629) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 6 | P (1Y) | CFAP144(FAM183A) | polymer | 139 | 16431.4 | 1 | UniProt (A0A7M7GGZ7) Pfam (PF14886) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 7 | FC, GC, HC, IC, JC... (1a, 1b, 5E, 5F, 5G...) | Outer dense fiber protein 3 | polymer | 251 | 27280.8 | 13 | UniProt (A0A7M7RI41) Pfam (PF07004) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 8 | S (1d) | Tex33 | polymer | 359 | 40544.2 | 1 | UniProt (A0A7M7NRA7) Pfam (PF15400) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 9 | T, U (1f, 1g) | C20Orf85 | polymer | 206 | 23738.6 | 2 | UniProt (A0A7M7HL88) Pfam (PF14945) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 10 | RE, SE, TE, V, W (1i, 1j, 9M, 9N, 9O) | ATP6V1FNB | polymer | 188 | 21973.3 | 5 | UniProt (A0A7M7GIN5) Pfam (PF22589) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 11 | X, Y (1l, 1m) | Tex26(LOC100888047) | polymer | 176 | 19625.0 | 2 | UniProt (A0A7M7GGC2) Pfam (PF22581) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 12 | AA, BA, CA, Z (1o, 1p, 1q, 1r) | Meiosis-specific nuclear structural protein 1 | polymer | 142 | 17323.6 | 4 | UniProt (A0A7M7NFX5) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 13 | IA, JA, KA, LA (2A, 2B, 2C, 2D) | Enkurin domain-containing protein | polymer | 258 | 30122.5 | 4 | UniProt (A0A7M7RFW1) Pfam (PF13864) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 14 | MA (2G) | CFAP107 | polymer | 235 | 27343.6 | 1 | UniProt (A0A7M7RF95) Pfam (PF22595) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 15 | NA, OA, PA (2J, 2K, 2L) | Cilia- and flagella-associated protein 126 | polymer | 141 | 15883.7 | 3 | UniProt (A0A7M7NA77) Pfam (PF22611) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 16 | QA (2O) | Flagellar FliJ protein | polymer | 120 | 14037.0 | 1 | UniProt (A0A7M7LW98) Pfam (PF15104) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 17 | RA, SA (2R, 2S) | Meiosis-specific nuclear structural protein 1 | polymer | 499 | 61705.2 | 2 | UniProt (A0A7M7REB1) Pfam (PF13868) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 18 | TA, UA (2V, 2W) | Cilia- and flagella-associated protein 161 | polymer | 292 | 32480.7 | 2 | UniProt (A0A7M7RAY9) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 19 | AB, BB, CB, WA, XA... (3A, 3B, 3C, 3D, 3E...) | CFA20 domain-containing protein | polymer | 195 | 22892.6 | 7 | UniProt (A0A7M7SUA7) Pfam (PF05018) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 20 | DB, EB (3J, 3K) | EF-hand domain-containing protein | polymer | 592 | 66165.8 | 2 | UniProt (A0A7M7RFU1) Pfam (PF13499) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 21 | FB, GB (3N, 3O) | Trichohyalin-plectin-homology domain-containing protein | polymer | 560 | 65783.4 | 2 | UniProt (A0A7M7REW2) Pfam (PF13868) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 22 | HB, IB, JB (3R, 3S, 3T) | CFAP276 | polymer | 172 | 19508.8 | 3 | UniProt (A0A7M7RBR2) Pfam (PF12494) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 23 | KB, LB, MB, NB (3W, 3X, 3Y, 3Z) | Cilia- and flagella-associated protein 45 | polymer | 541 | 64116.3 | 4 | UniProt (A0A7M7NFL8) Pfam (PF13868) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 24 | OB, PB, QB (4A, 4B, 4C) | Cilia- and flagella-associated protein 52 | polymer | 635 | 70455.1 | 3 | UniProt (A0A7M7NV05) Pfam (PF00400) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 25 | RB, SB (4F, 4G) | Trichohyalin-plectin-homology domain-containing protein | polymer | 516 | 62040.8 | 2 | UniProt (A0A7M7RHS4) Pfam (PF13868) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 26 | TB, UB (4J, 4K) | Nucleoside diphosphate kinase | polymer | 380 | 42906.5 | 2 | UniProt (A0A7M7SX53) Pfam (PF00334) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 27 | VB, WB, XB, YB (4N, 4O, 4P, 4Q) | Cilia- and flagella-associated protein 77 | polymer | 243 | 27690.3 | 4 | UniProt (A0A7M7TG06) Pfam (PF14825) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 28 | AC, BC, ZB (4T, 4U, 4V) | Cilia- and flagella-associated protein 97 | polymer | 231 | 27701.8 | 3 | UniProt (A0A7M7GHD6) Pfam (PF13879) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 29 | CC (4Y) | HeLo_like_N(LOC577943) | polymer | 302 | 34673.0 | 1 | UniProt (A0A7M7RHW6) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 30 | DC, EC, YE, ZE (5A, 5B, 9Y, 9Z) | Outer dense fiber protein 3 | polymer | 277 | 30624.7 | 4 | UniProt (A0A7M7RDG4) Pfam (PF07004) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 31 | QC, RC, SC, TC, UC... (6A, 6B, 6C, 6D, 6E...) | PACRG | polymer | 236 | 26652.8 | 6 | UniProt (A0A7M7REU1) Pfam (PF10274) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 32 | WC, XC (6I, 6J) | Pierce1 | polymer | 123 | 13920.3 | 2 | UniProt (A0A7M7GRL1) Pfam (PF14892) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 33 | YC, ZC (6M, 6N) | Protein phosphatase 1 regulatory subunit 32 | polymer | 469 | 52795.9 | 2 | UniProt (A0A7M7P181) Pfam (PF15691) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 34 | AD, BD (6Q, 6R) | RIB35 | polymer | 310 | 34957.2 | 2 | UniProt (A0A7M7THB5) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 35 | CD, DD, ED, FD (6U, 6V, 6W, 6X) | RIB43A-like with coiled-coils protein 2 | polymer | 379 | 45162.1 | 4 | UniProt (A0A7M7RDQ5) Pfam (PF05914) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 36 | GD, HD, ID, JD (7A, 7B, 7C, 7D) | EF-hand domain-containing family member C2 | polymer | 744 | 85763.7 | 4 | UniProt (A0A7M7RHU7) Pfam (PF06565) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 37 | KD, LD, MD (7G, 7H, 7I) | Flagellar protofilament ribbon protein rib74 | polymer | 645 | 74127.6 | 3 | UniProt (Q6TXM2) Pfam (PF06565) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 38 | ND, OD (7M, 7N) | SAXO3(LOC115918676) | polymer | 322 | 37032.7 | 2 | UniProt (A0A7M7THD0) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 39 | PD, QD (7Q, 7R) | TEPP protein | polymer | 185 | 21414.1 | 2 | UniProt (A0A7M7N5A5) Pfam (PF22574) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 40 | RD, SD (7U, 7V) | SPATA48 | polymer | 200 | 23009.6 | 2 | Strongylocentrotus purpuratus | ||
| 41 | TD, UD (7Y, 7Z) | Sperm-associated antigen 8 | polymer | 204 | 23161.6 | 2 | UniProt (A0A7M7N7W6) Pfam (PF22584) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 42 | VD (8A) | Testicular haploid expressed gene protein-like | polymer | 268 | 30135.2 | 1 | UniProt (A0A7M7RFU8) Pfam (PF14912) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 43 | WD, XD, YD, ZD (8D, 8E, 8F, 8G) | Tektin | polymer | 462 | 53036.8 | 4 | UniProt (Q9U0E3) Pfam (PF03148) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 44 | AE, BE, CE, DE, EE (8J, 8K, 8L, 8M, 8N) | Tektin | polymer | 430 | 49845.4 | 5 | UniProt (A0A7M7SXG5) Pfam (PF03148) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 45 | FE, GE, HE, IE, JE (8Q, 8R, 8S, 8T, 8U) | Tektin | polymer | 402 | 46691.7 | 5 | UniProt (Q26623) Pfam (PF03148) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 46 | KE, LE, ME (8X, 8Y, 8Z) | Tex43 | polymer | 119 | 14191.2 | 3 | UniProt (A0A7M7G0R8) Pfam (PF14983) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 47 | NE (9A) | Tex36(CFAP95, C9orf135) | polymer | 220 | 25701.3 | 1 | UniProt (A0A7M7RBC4) Pfam (PF15139) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 48 | OE (9D) | CFAP90(C5orf49) | polymer | 171 | 19712.1 | 1 | UniProt (A0A7M7SYJ8) Pfam (PF15074) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 49 | PE (9G) | Tex49 | polymer | 150 | 17482.9 | 1 | UniProt (A0A7M7RDT3) Pfam (PF22593) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 50 | QE (9J) | Tex49_homologue(LOC580808) | polymer | 179 | 20695.5 | 1 | UniProt (A0A7M7RFU3) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 51 | UE (9R) | CFAP68(UPF0686, C11orf1) | polymer | 153 | 17679.6 | 1 | UniProt (A0A7M7RBK2) Pfam (PF06608) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 52 | VE (9T) | SPATA45 | polymer | 83 | 9870.9 | 1 | UniProt (A0A7M7RHE9) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 53 | WE, XE (9V, 9W) | C4orf45 | polymer | 294 | 32467.6 | 2 | UniProt (A0A7M7RHI6) Pfam (PF15123) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 54 | AF, AG, AH, AI, AJ... (AA, AB, AE, AG, AI...) | Tubulin alpha chain | polymer | 451 | 50184.5 | 148 | UniProt (A0A7M7RGW6) Pfam (PF00091) Pfam (PF03953) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 55 | BH, CF, CG, CI, CJ... (AC, AD, AF, AH, AJ...) | Tubulin beta chain | polymer | 447 | 50098.0 | 150 | UniProt (A0A7M7NS69) Pfam (PF00091) Pfam (PF03953) | Strongylocentrotus purpuratus (purple sea urchin) | |
| 56 | AAA, ABA, AHA, AS, AT... (MK, OB, WB, CA, DE...) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 148 | Chemie (GTP) | |||
| 57 | AEA, AFA, AW, AY, BAA... (SA, TE, HE, KA, MK...) | MAGNESIUM ION | non-polymer | 24.3 | 148 | Chemie (MG) | |||
| 58 | ACA, ADA, AGA, AR, AX... (PF, QJ, UJ, AJ, IJ...) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 150 | Chemie (GDP) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 454 |
| Total formula weight | 21017135.1 | |
| Non-Polymers* | Number of molecules | 446 |
| Total formula weight | 147507.9 | |
| All* | Total formula weight | 21164643.0 |
