8SGB
Crystal Structure of CD1d-lipid complexed with Beta-2-Microglobulin, TCR Alpha-Chain and TCR Beta-Chain
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Antigen-presenting glycoprotein CD1d | polymer | 347 | 39471.6 | 1 | UniProt (P15813) Pfam (PF16497) Pfam (PF07654) In PDB | Homo sapiens (human) | R3G1 |
2 | B | Beta-2-microglobulin | polymer | 100 | 11879.4 | 1 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (human) | |
3 | C | Natural Killer T cell receptor TRAV26A-2 alpha chain | polymer | 207 | 23183.7 | 1 | Homo sapiens | ||
4 | D | Natural Killer T cell receptor TRBV19 beta chain | polymer | 243 | 27676.7 | 1 | Homo sapiens | ||
5 | E | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
7 | A | sphingomyelin | non-polymer | 814.2 | 1 | Chemie (FO4) | |||
8 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
9 | water | water | 18.0 | 19 | Chemie (HOH) |
Sequence modifications
A: 5 - 278 (UniProt: P15813)
B: 1 - 99 (UniProt: P61769)
PDB | External Database | Details |
---|---|---|
Met 4 | - | initiating methionine |
Ser 279 | - | expression tag |
Leu 280 | - | expression tag |
Val 281 | - | expression tag |
Pro 282 | - | expression tag |
Arg 283 | - | expression tag |
Gly 284 | - | expression tag |
Ser 285 | - | expression tag |
Gly 286 | - | expression tag |
Ser 287 | - | expression tag |
Arg 288 | - | expression tag |
Ile 289 | - | expression tag |
Ala 290 | - | expression tag |
Arg 291 | - | expression tag |
Leu 292 | - | expression tag |
Glu 293 | - | expression tag |
Glu 294 | - | expression tag |
Lys 295 | - | expression tag |
Val 296 | - | expression tag |
Lys 297 | - | expression tag |
Thr 298 | - | expression tag |
Leu 299 | - | expression tag |
Lys 300 | - | expression tag |
Ala 301 | - | expression tag |
Gln 302 | - | expression tag |
Asn 303 | - | expression tag |
Ser 304 | - | expression tag |
Glu 305 | - | expression tag |
Leu 306 | - | expression tag |
Ala 307 | - | expression tag |
Ser 308 | - | expression tag |
Thr 309 | - | expression tag |
Ala 310 | - | expression tag |
Asn 311 | - | expression tag |
Met 312 | - | expression tag |
Leu 313 | - | expression tag |
Arg 314 | - | expression tag |
Glu 315 | - | expression tag |
Gln 316 | - | expression tag |
Val 317 | - | expression tag |
Ala 318 | - | expression tag |
Gln 319 | - | expression tag |
Leu 320 | - | expression tag |
Lys 321 | - | expression tag |
Gln 322 | - | expression tag |
Lys 323 | - | expression tag |
Val 324 | - | expression tag |
Met 325 | - | expression tag |
Asn 326 | - | expression tag |
His 327 | - | expression tag |
Gly 328 | - | expression tag |
Ser 329 | - | expression tag |
Gly 330 | - | expression tag |
Leu 331 | - | expression tag |
Asn 332 | - | expression tag |
Asp 333 | - | expression tag |
Ile 334 | - | expression tag |
Phe 335 | - | expression tag |
Glu 336 | - | expression tag |
Ala 337 | - | expression tag |
Gln 338 | - | expression tag |
Lys 339 | - | expression tag |
Ile 340 | - | expression tag |
Glu 341 | - | expression tag |
Trp 342 | - | expression tag |
His 343 | - | expression tag |
Glu 344 | - | expression tag |
His 345 | - | expression tag |
His 346 | - | expression tag |
His 347 | - | expression tag |
His 348 | - | expression tag |
His 349 | - | expression tag |
His 350 | - | expression tag |
PDB | External Database | Details |
---|---|---|
Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 102211.4 | |
Branched | Number of molecules | 1 |
Total formula weight | 586.5 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1279.6 | |
All* | Total formula weight | 104077.5 |