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8SB2

CryoEM structure of DH270.I2-CH848.10.17

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, F, KCH848.10.17.SOSIP gp120polymer47152847.93UniProt (A0A1W6IPB2)
Pfam (PF00516)
In PDB
HIV-1 06TG.HT008
2B, G, LCH848.10.17.SOSIP gp41polymer13214733.73Pfam (PF00517)
UniProt (by SIFTS) (A0A6H1VLP0)
In PDB
HIV-1 06TG.HT008
3C, H, MDH270.I2.6 variable heavy chainpolymer12714131.63Homo sapiens (human)
4D, I, NDH270.I2.6 variable light chainpolymer11011411.53Homo sapiens (human)
5Ebeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.51In PDB
GlyTouCan (G15407YE)
6J, Xalpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.82In PDB
GlyTouCan (G42227JK)
7O, T, Yalpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1883.73In PDB
GlyTouCan (G60230HH)
8P, Zalpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1073.02In PDB
GlyTouCan (G94106MV)
9Q, Salpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched748.72In PDB
GlyTouCan (G81315DD)
10R, V, W2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.43In PDB
GlyTouCan (G42666HT)
11a, Ualpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched910.82In PDB
GlyTouCan (G94626GC)
Sequence modifications
A, F, K: 34 - 511 (UniProt: A0A1W6IPB2)
PDBExternal DatabaseDetails
Ala 31-expression tag
Glu 32-expression tag
Asn 33-expression tag
Cys 201Val 189conflict
Cys 433Ala 417conflict
Lys 490Glu 474conflict
Glu 492Gln 476conflict
Val 496Ile 480conflict
Arg 500Gly 484conflict
Cys 501Ala 485conflict
Gly 507Glu 491conflict
Arg 509Glu 493conflict
Arg 510Lys 494conflict
Arg 512-expression tag
Arg 513-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight279374.3
BranchedNumber of molecules15
Total formula weight14797.3
All*Total formula weight294171.6
*Water molecules are not included.

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PDB entries from 2024-07-03

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