8SAW
CryoEM structure of DH270.UCA.G57R-CH848.10.17DT
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, E, K | CH848.3.D0949.10.17chim.6R.SOSIP.664 gp120A | polymer | 471 | 52847.9 | 3 | UniProt (A0A1W6IPB2) Pfam (PF00516) In PDB | HIV-1 06TG.HT008 | |
2 | B, F, L | CH848.3.D0949.10.17chim.6R.SOSIP.664 gp41 | polymer | 132 | 14733.7 | 3 | Pfam (PF00517) UniProt (by SIFTS) (A0A6H1VLP0) In PDB | HIV-1 06TG.HT008 | |
3 | C, H, M | DH270.UCA. G57R heavy chain | polymer | 127 | 14240.9 | 3 | Homo sapiens (human) | ||
4 | D, I, N | DH270.UCA. G57R light chain | polymer | 110 | 11375.5 | 3 | Homo sapiens (human) | ||
5 | G, Q, U | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
6 | J, R, V | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1559.4 | 3 | In PDB GlyTouCan (G68668TB) | |||
7 | O, P, S, T, W... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) |
Sequence modifications
A, E, K: 34 - 511 (UniProt: A0A1W6IPB2)
PDB | External Database | Details |
---|---|---|
Ala 31 | - | expression tag |
Glu 32 | - | expression tag |
Asn 33 | - | expression tag |
Cys 201 | Val 189 | conflict |
Cys 433 | Ala 417 | conflict |
Lys 490 | Glu 474 | conflict |
Glu 492 | Gln 476 | conflict |
Val 496 | Ile 480 | conflict |
Arg 500 | Gly 484 | conflict |
Cys 501 | Ala 485 | conflict |
Gly 507 | Glu 491 | conflict |
Arg 509 | Glu 493 | conflict |
Arg 510 | Lys 494 | conflict |
Arg 512 | - | expression tag |
Arg 513 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 12 |
Total formula weight | 279593.9 | |
Branched | Number of molecules | 12 |
Total formula weight | 8984.2 | |
All* | Total formula weight | 288578.1 |