8S3D
Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2-amino-2-hydroxyglutarate (reaction intermediate) and NAD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (A, B, C, D, E...) | Glutamate dehydrogenase | polymer | 414 | 44894.0 | 6 | UniProt (G7JYL4) Pfam (PF02812) Pfam (PF00208) | Arabidopsis thaliana (thale cress) | |
| 2 | CB, G, GA, NB, RA... (E, A, C, F, D...) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 6 | Chemie (NAD) | |||
| 3 | BA, CA, DA, EB, H... (B, E, A, C, F...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 29 | Chemie (EDO) | |||
| 4 | J, KA, LA, O, PB... (A, C, F, D) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 8 | Chemie (PEG) | |||
| 5 | DB, HA, K, OB, SA... (E, C, A, F, D...) | (2S)-2-azanyl-2-oxidanyl-pentanedioic acid | non-polymer | 163.1 | 6 | Chemie (8GL) | |||
| 6 | GB, IB, Q, TA, Z (E, A, D, B) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 5 | Chemie (PG4) | |||
| 7 | EA, KB, QA, R, WB... (B, E, C, A, F...) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
| 8 | AB, FA, S (D, B, A) | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 9 | BB, FB, IA, T, W... (D, E, C, A, B...) | GLYCINE | non-polymer | 75.1 | 6 | Chemie (GLY) | |||
| 10 | AA (B) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
| 11 | AC, BC, CC, DC, YB... (C, D, E, F, A...) | water | water | 18.0 | 2636 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 411 (UniProt: G7JYL4)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 269364.1 | |
| Non-Polymers* | Number of molecules | 70 |
| Total formula weight | 9489.4 | |
| All* | Total formula weight | 278853.5 |
