8S3D
Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2-amino-2-hydroxyglutarate (reaction intermediate) and NAD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... | Glutamate dehydrogenase | polymer | 414 | 44894.0 | 6 | UniProt (G7JYL4) In PDB | Arabidopsis thaliana (thale cress) | |
| 2 | E, A, C, F, D... | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 6 | Chemie (NAD) | |||
| 3 | B, E, A, C, F... | 1,2-ETHANEDIOL | non-polymer | 62.1 | 29 | Chemie (EDO) | |||
| 4 | A, C, F, D | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 8 | Chemie (PEG) | |||
| 5 | E, C, A, F, D... | (2S)-2-azanyl-2-oxidanyl-pentanedioic acid | non-polymer | 163.1 | 6 | Chemie (8GL) | |||
| 6 | E, A, D, B | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 5 | Chemie (PG4) | |||
| 7 | B, E, C, A, F... | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
| 8 | D, B, A | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) | |||
| 9 | D, E, C, A, B... | GLYCINE | non-polymer | 75.1 | 6 | Chemie (GLY) | |||
| 10 | B | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
| 11 | water | water | 18.0 | 2636 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 411 (UniProt: G7JYL4)
| PDB | External Database | Details |
|---|---|---|
| Ser -2 | - | expression tag |
| Asn -1 | - | expression tag |
| Ala 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 269364.1 | |
| Non-Polymers* | Number of molecules | 70 |
| Total formula weight | 9489.4 | |
| All* | Total formula weight | 278853.5 |
