8S3A
Crystal structure of Medicago truncatula glutamate dehydrogenase 2 in complex with 2,6-pyridinedicarboxylic acid and NAD
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C, D, E... (A, B, C, D, E...) | Glutamate dehydrogenase | polymer | 414 | 44894.0 | 6 | UniProt (G7JYL4) Pfam (PF02812) Pfam (PF00208) | Medicago truncatula (barrel medic) | |
2 | G (A) | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 1 | Chemie (MPD) | |||
3 | CA, DA, EA, GA, H... (D, E, A, F, B...) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 22 | Chemie (EDO) | |||
4 | I (A) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 1 | Chemie (PEG) | |||
5 | BA, N, NA, Q, UA... (D, A, E, B, F...) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 6 | Chemie (NAD) | |||
6 | AA, FA, O, OA, P... (C, D, A, E, B...) | SODIUM ION | non-polymer | 23.0 | 8 | Chemie (NA) | |||
7 | HA, PA (E, F) | PYRIDINE-2,6-DICARBOXYLIC ACID | non-polymer | 167.1 | 2 | Chemie (PDC) | |||
8 | KA (E) | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
9 | TA (F) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 1 | Chemie (PG4) | |||
10 | AB, BB, WA, XA, YA... (E, F, A, B, C...) | water | water | 18.0 | 1092 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F: 1 - 411 (UniProt: G7JYL4)
PDB | External Database | Details |
---|---|---|
Ser -2 | - | expression tag |
Asn -1 | - | expression tag |
Ala 0 | - | expression tag |
Sequence viewer
Display chain:
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 269364.1 | |
Non-Polymers* | Number of molecules | 42 |
Total formula weight | 6432.9 | |
All* | Total formula weight | 275797.0 |