8S1P
YlmH bound to PtRNA-50S
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (3) | 50S ribosomal protein L35 | polymer | 66 | 7581.1 | 1 | UniProt (P55874) Pfam (PF01632) | Bacillus subtilis subsp. subtilis str. 168 | |
| 2 | B (4) | 50S ribosomal protein L36 | polymer | 37 | 4318.4 | 1 | UniProt (P20278) Pfam (PF00444) | Bacillus subtilis subsp. subtilis str. 168 | BL38,Ribosomal protein B,Ribosomal protein II |
| 3 | C (6) | 50S ribosomal protein L31 | polymer | 66 | 7458.6 | 1 | UniProt (Q03223) Pfam (PF01197) | Bacillus subtilis subsp. subtilis str. 168 | |
| 4 | D (A) | 23S rRNA | polymer | 2928 | 949761.4 | 1 | Bacillus subtilis subsp. subtilis str. 168 | ||
| 5 | E (B) | 5S rRNA | polymer | 112 | 36157.5 | 1 | GenBank (1150402534) | Bacillus subtilis subsp. subtilis str. 168 | |
| 6 | F (C) | 50S ribosomal protein L2 | polymer | 277 | 30335.1 | 1 | UniProt (P42919) Pfam (PF00181) Pfam (PF03947) | Bacillus subtilis subsp. subtilis str. 168 | BL2 |
| 7 | G (D) | 50S ribosomal protein L3 | polymer | 209 | 22723.3 | 1 | UniProt (P42920) Pfam (PF00297) | Bacillus subtilis subsp. subtilis str. 168 | BL3 |
| 8 | H (E) | 50S ribosomal protein L4 | polymer | 207 | 22425.0 | 1 | UniProt (P42921) Pfam (PF00573) | Bacillus subtilis subsp. subtilis str. 168 | |
| 9 | I (F) | 50S ribosomal protein L5 | polymer | 179 | 20177.6 | 1 | UniProt (P12877) Pfam (PF00281) Pfam (PF00673) | Bacillus subtilis subsp. subtilis str. 168 | BL6 |
| 10 | J (G) | Large ribosomal subunit protein uL6 | polymer | 179 | 19543.4 | 1 | UniProt (P46898) Pfam (PF00347) | Bacillus subtilis subsp. subtilis str. 168 | |
| 11 | K (J) | 50S ribosomal protein L13 | polymer | 145 | 16407.1 | 1 | UniProt (P70974) Pfam (PF00572) | Bacillus subtilis subsp. subtilis str. 168 | |
| 12 | L (K) | 50S ribosomal protein L14 | polymer | 122 | 13175.3 | 1 | UniProt (P12875) Pfam (PF00238) | Bacillus subtilis subsp. subtilis str. 168 | |
| 13 | M (L) | 50S ribosomal protein L15 | polymer | 146 | 15410.7 | 1 | UniProt (P19946) Pfam (PF00828) | Bacillus subtilis subsp. subtilis str. 168 | |
| 14 | N (M) | 50S ribosomal protein L16 | polymer | 144 | 16223.0 | 1 | UniProt (P14577) Pfam (PF00252) | Bacillus subtilis subsp. subtilis str. 168 | |
| 15 | O (N) | 50S ribosomal protein L17 | polymer | 120 | 13774.8 | 1 | UniProt (P20277) Pfam (PF01196) | Bacillus subtilis subsp. subtilis str. 168 | BL15,BL21 |
| 16 | P (O) | 50S ribosomal protein L18 | polymer | 120 | 12993.8 | 1 | UniProt (P46899) Pfam (PF00861) | Bacillus subtilis subsp. subtilis str. 168 | BL16 |
| 17 | Q (P) | 50S ribosomal protein L19 | polymer | 115 | 13416.9 | 1 | UniProt (O31742) Pfam (PF01245) | Bacillus subtilis subsp. subtilis str. 168 | |
| 18 | R (Q) | Large ribosomal subunit protein bL20 | polymer | 119 | 13669.2 | 1 | UniProt (P55873) Pfam (PF00453) | Bacillus subtilis subsp. subtilis str. 168 | |
| 19 | S (R) | 50S ribosomal protein L21 | polymer | 102 | 11296.1 | 1 | UniProt (P26908) Pfam (PF00829) | Bacillus subtilis subsp. subtilis str. 168 | BL20 |
| 20 | T (S) | 50S ribosomal protein L22 | polymer | 113 | 12481.6 | 1 | UniProt (P42060) Pfam (PF00237) | Bacillus subtilis subsp. subtilis str. 168 | |
| 21 | U (T) | Large ribosomal subunit protein uL23 | polymer | 95 | 10978.8 | 1 | UniProt (P42924) Pfam (PF00276) | Bacillus subtilis subsp. subtilis str. 168 | |
| 22 | V (U) | 50S ribosomal protein L24 | polymer | 103 | 11166.1 | 1 | UniProt (P0CI78) Pfam (PF00467) Pfam (PF17136) | Bacillus subtilis subsp. subtilis str. 168 | 12 kDa DNA-binding protein,BL23,HPB12 |
| 23 | W (W) | Large ribosomal subunit protein bL27 | polymer | 94 | 10391.9 | 1 | UniProt (P05657) Pfam (PF01016) | Bacillus subtilis subsp. subtilis str. 168 | |
| 24 | X (X) | 50S ribosomal protein L28 | polymer | 62 | 6826.1 | 1 | UniProt (P37807) Pfam (PF00830) | Bacillus subtilis subsp. subtilis str. 168 | |
| 25 | Y (Y) | 50S ribosomal protein L29 | polymer | 66 | 7728.0 | 1 | UniProt (P12873) Pfam (PF00831) | Bacillus subtilis subsp. subtilis str. 168 | |
| 26 | Z (Z) | Large ribosomal subunit protein uL30 | polymer | 59 | 6650.8 | 1 | UniProt (P19947) Pfam (PF00327) | Bacillus subtilis subsp. subtilis str. 168 | |
| 27 | AA (b) | Nascent chain | polymer | 4 | 358.4 | 1 | Bacillus subtilis subsp. subtilis str. 168 | ||
| 28 | BA (V) | Putative RNA-binding protein YlmH | polymer | 275 | 30823.8 | 1 | UniProt (P71020) Pfam (PF21278) Pfam (PF17774) Pfam (PF01479) | Bacillus subtilis subsp. subtilis str. 168 | |
| 29 | CA (a) | P-tRNA | polymer | 76 | 24491.5 | 1 | GenBank (1837880844) | Bacillus subtilis subsp. subtilis str. 168 | |
| 30 | DA (0) | 50S ribosomal protein L32 | polymer | 59 | 6745.1 | 1 | UniProt (O34687) Pfam (PF01783) | Bacillus subtilis subsp. subtilis str. 168 | |
| 31 | EA (1) | 50S ribosomal protein L33 1 | polymer | 49 | 5915.9 | 1 | UniProt (P56849) Pfam (PF00471) | Bacillus subtilis subsp. subtilis str. 168 | |
| 32 | FA (2) | 50S ribosomal protein L34 | polymer | 44 | 5271.3 | 1 | UniProt (P05647) Pfam (PF00468) | Bacillus subtilis subsp. subtilis str. 168 | |
| 33 | GA, GI, HA, HI (4, 0, 6, 1) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 34 | AB, AC, AI, BB, BC... (A, C) | POTASSIUM ION | non-polymer | 39.1 | 47 | Chemie (K) | |||
| 35 | NB (A) | CHLORAMPHENICOL | non-polymer | 323.1 | 1 | Chemie (CLM) | |||
| 36 | AD, AE, AF, AG, AH... (A, C, D, N, a) | MAGNESIUM ION | non-polymer | 24.3 | 158 | Chemie (MG) | |||
| 37 | AJ, BJ, CJ, DJ, EJ... (W, X, Z, a, 0...) | water | water | 18.0 | 2771 | Chemie (HOH) |
Sequence modifications
V: 1 - 257 (UniProt: P71020)
| PDB | External Database | Details |
|---|---|---|
| Gly 258 | - | expression tag |
| Ser 259 | - | expression tag |
| Gly 260 | - | expression tag |
| Ser 261 | - | expression tag |
| Gly 262 | - | expression tag |
| Ser 263 | - | expression tag |
| Gly 264 | - | expression tag |
| Ser 265 | - | expression tag |
| Gly 266 | - | expression tag |
| Ser 267 | - | expression tag |
| Asp 268 | - | expression tag |
| Tyr 269 | - | expression tag |
| Lys 270 | - | expression tag |
| Asp 271 | - | expression tag |
| Asp 272 | - | expression tag |
| Asp 273 | - | expression tag |
| Asp 274 | - | expression tag |
| Lys 275 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 32 |
| Total formula weight | 1386677.8 | |
| Non-Polymers* | Number of molecules | 210 |
| Total formula weight | 6262.6 | |
| All* | Total formula weight | 1392940.3 |
