8RTB
Extended inner membrane complex (IMC) protomer structure (TrwM/VirB3-TrwK/VirB4-TrwI/VirB6-TrwG/VirB8-TrwE/VirB10) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | C | TrwM protein | polymer | 104 | 12292.6 | 1 | UniProt (O50329) Pfam (PF05101) In PDB | Escherichia coli | |
2 | A, B | TrwK protein | polymer | 823 | 93769.9 | 2 | UniProt (O50330) Pfam (PF03135) Pfam (PF19044) In PDB | Escherichia coli | |
3 | E, D, F, G | TrwG protein | polymer | 231 | 25800.0 | 4 | UniProt (O50335) Pfam (PF04335) In PDB | Escherichia coli | |
4 | H | TrwE protein | polymer | 395 | 42443.8 | 1 | UniProt (O50337) Pfam (PF03743) In PDB | Escherichia coli | |
5 | J | TrwI protein | polymer | 342 | 35324.2 | 1 | UniProt (O50333) Pfam (PF04610) In PDB | Escherichia coli |
Sequence modifications
C: 1 - 104 (UniProt: O50329)
E, D, F, G: 1 - 231 (UniProt: O50335)
H: 1 - 395 (UniProt: O50337)
J: 1 - 342 (UniProt: O50333)
PDB | External Database | Details |
---|---|---|
Trp 24 | Leu 24 | conflict |
Val 26 | Glu 26 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 188 | Arg 188 | conflict |
PDB | External Database | Details |
---|---|---|
Asp 335 | Asn 335 | conflict |
PDB | External Database | Details |
---|---|---|
Gln 108 | Glu 108 | conflict |
Leu 152 | Pro 152 | conflict |
Leu 153 | Ala 153 | conflict |
Ala 154 | Gly 154 | conflict |
Thr 155 | Tyr 155 | conflict |
Leu 157 | Pro 157 | conflict |
Leu 158 | Ala 158 | conflict |
Ala 159 | Gly 159 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 380800.4 | |
All* | Total formula weight | 380800.4 |