8RO1
Structure of the C. elegans Intron Lariat Spliceosome double-primed for disassembly (ILS'')
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | 2 | U2 snRNA | polymer | 228 | 68422.4 | 1 | Caenorhabditis elegans | ||
| 2 | 5 | U5 snRNA | polymer | 112 | 35826.1 | 1 | Caenorhabditis elegans | ||
| 3 | 6 | U6 snRNA | polymer | 101 | 32483.4 | 1 | Caenorhabditis elegans | ||
| 4 | A | Pre-mRNA-splicing factor 8 homolog | polymer | 2329 | 272396.2 | 1 | UniProt (P34369) Pfam (PF08082) Pfam (PF08083) Pfam (PF10598) Pfam (PF10597) Pfam (PF10596) Pfam (PF12134) Pfam (PF01398) Pfam (PF08084) In PDB | Caenorhabditis elegans | |
| 5 | C | Tr-type G domain-containing protein | polymer | 974 | 110612.9 | 1 | UniProt (Q23463) Pfam (PF00009) Pfam (PF03144) Pfam (PF03764) Pfam (PF00679) Pfam (PF16004) In PDB | Caenorhabditis elegans | |
| 6 | D | Protein isy-1 | polymer | 267 | 31326.2 | 1 | UniProt (Q20716) Pfam (PF06246) In PDB | Caenorhabditis elegans | |
| 7 | DX | Pre-mRNA-splicing factor ATP-dependent RNA helicase ddx-15 | polymer | 739 | 84495.5 | 1 | UniProt (Q20875) Pfam (PF00270) Pfam (PF00271) Pfam (PF04408) Pfam (PF21010) Pfam (PF07717) In PDB | Caenorhabditis elegans | DEAH box protein 15 |
| 8 | E | WD_REPEATS_REGION domain-containing protein | polymer | 331 | 36865.6 | 1 | UniProt (Q19211) Pfam (PF00400) In PDB | Caenorhabditis elegans | |
| 9 | I | Pre-mRNA-splicing factor SYF1 | polymer | 855 | 99675.1 | 1 | UniProt (P91175) Pfam (PF13181) In PDB | Caenorhabditis elegans | |
| 10 | IN | Intron lariat RNA | polymer | 51 | 10348.2 | 1 | Caenorhabditis elegans | ||
| 11 | J | TPR_REGION domain-containing protein | polymer | 744 | 88116.0 | 1 | UniProt (O16376) Pfam (PF02184) In PDB | Caenorhabditis elegans | |
| 12 | K | Pre-mRNA-splicing factor SPF27 | polymer | 238 | 27679.9 | 1 | UniProt (Q22417) Pfam (PF05700) In PDB | Caenorhabditis elegans | |
| 13 | L | Cell division cycle 5-like protein | polymer | 755 | 85843.5 | 1 | UniProt (G5EFC4) Pfam (PF13921) Pfam (PF11831) In PDB | Caenorhabditis elegans | |
| 14 | L1 | CWF19-like protein 1 homolog | polymer | 533 | 59034.9 | 1 | UniProt (O16216) Pfam (PF04677) Pfam (PF04676) In PDB | Caenorhabditis elegans | |
| 15 | L2 | CWF19-like protein 2 homolog | polymer | 460 | 53269.2 | 1 | UniProt (Q10946) Pfam (PF04677) Pfam (PF04676) In PDB | Caenorhabditis elegans | |
| 16 | M | Pre-mRNA-splicing factor syf-2 | polymer | 234 | 27719.0 | 1 | UniProt (Q09385) Pfam (PF08231) In PDB | Caenorhabditis elegans | |
| 17 | N | Protein BUD31 homolog | polymer | 147 | 17153.9 | 1 | UniProt (P34313) Pfam (PF01125) In PDB | Caenorhabditis elegans | Protein G10 homolog |
| 18 | O | Pre-mRNA-splicing factor RBM22 | polymer | 408 | 45902.8 | 1 | UniProt (Q22412) Pfam (PF21369) Pfam (PF16131) Pfam (PF00076) In PDB | Caenorhabditis elegans | RNA-binding motif protein 22 |
| 19 | P | Spliceosome-associated protein CWC15 homolog | polymer | 230 | 26154.8 | 1 | UniProt (O45766) Pfam (PF04889) In PDB | Caenorhabditis elegans | |
| 20 | PX | GCF C-terminal domain-containing protein | polymer | 809 | 94244.9 | 1 | UniProt (G5ECH1) Pfam (PF15458) Pfam (PF07842) In PDB | Caenorhabditis elegans | |
| 21 | Q | Intron-binding protein aquarius | polymer | 1467 | 170397.7 | 1 | UniProt (Q9U1Q7) Pfam (PF16399) Pfam (PF21143) Pfam (PF21144) Pfam (PF13086) Pfam (PF13087) In PDB | Caenorhabditis elegans | |
| 22 | R | Uncharacterized protein T27F2.1 | polymer | 535 | 60303.5 | 1 | UniProt (Q22836) Pfam (PF02731) In PDB | Caenorhabditis elegans | |
| 23 | S | Peptidyl-prolyl cis-trans isomerase | polymer | 169 | 18547.0 | 1 | UniProt (Q18445) Pfam (PF00160) In PDB | Caenorhabditis elegans | PPIase |
| 24 | T | WD_REPEATS_REGION domain-containing protein | polymer | 494 | 54766.2 | 1 | UniProt (G5EEL2) Pfam (PF00400) In PDB | Caenorhabditis elegans | |
| 25 | TF | Septin and tuftelin-interacting protein 1 homolog | polymer | 830 | 94421.5 | 1 | UniProt (Q17784) Pfam (PF12457) Pfam (PF01585) Pfam (PF07842) In PDB | Caenorhabditis elegans | STIP-1 |
| 26 | W | WD_REPEATS_REGION domain-containing protein | polymer | 567 | 65385.7 | 1 | UniProt (O44729) Pfam (PF00400) In PDB | Caenorhabditis elegans | |
| 27 | X | Replication stress response regulator SDE2 | polymer | 500 | 57466.1 | 1 | UniProt (G5EC45) Pfam (PF22782) Pfam (PF13297) In PDB | Caenorhabditis elegans | |
| 28 | Z | Coiled-coil domain-containing protein 12 | polymer | 69 | 8135.5 | 1 | UniProt (Q95XJ1) Pfam (PF08315) In PDB | Caenorhabditis elegans | |
| 29 | a, h | Small nuclear ribonucleoprotein Sm D3 | polymer | 136 | 14836.2 | 2 | UniProt (Q17348) Pfam (PF01423) In PDB | Caenorhabditis elegans | Sm-D3,snRNP core protein D3 |
| 30 | b, i | Probable small nuclear ribonucleoprotein-associated protein B | polymer | 160 | 16768.6 | 2 | UniProt (P91918) Pfam (PF01423) In PDB | Caenorhabditis elegans | snRNP-B,Sm protein B,Sm-B,SmB |
| 31 | c, j | Small nuclear ribonucleoprotein Sm D1 | polymer | 127 | 13724.1 | 2 | UniProt (E3LR34) Pfam (PF01423) In PDB | Caenorhabditis elegans | snRNP core protein D1 |
| 32 | d, k | Probable small nuclear ribonucleoprotein Sm D2 | polymer | 118 | 13291.5 | 2 | UniProt (Q18786) Pfam (PF01423) In PDB | Caenorhabditis elegans | Sm-D2,snRNP core protein D2 |
| 33 | e, l | Probable small nuclear ribonucleoprotein E | polymer | 90 | 10625.3 | 2 | UniProt (Q9XTU6) Pfam (PF01423) In PDB | Caenorhabditis elegans | snRNP-E,Sm protein E,Sm-E,SmE |
| 34 | f, m | Probable small nuclear ribonucleoprotein F | polymer | 85 | 9256.5 | 2 | UniProt (P34659) Pfam (PF01423) In PDB | Caenorhabditis elegans | snRNP-F,Sm protein F,Sm-F,SmF |
| 35 | g, n | Probable small nuclear ribonucleoprotein G | polymer | 77 | 8756.2 | 2 | UniProt (Q9N4G9) Pfam (PF01423) In PDB | Caenorhabditis elegans | snRNP-G,Sm protein G,Sm-G,SmG |
| 36 | o | Probable U2 small nuclear ribonucleoprotein A' | polymer | 253 | 28905.9 | 1 | UniProt (Q9BLB6) Pfam (PF12799) In PDB | Caenorhabditis elegans | U2 snRNP A',Masculinization of germline protein 2,Spliceosome-associated protein mog-2 |
| 37 | p | RRM domain-containing protein | polymer | 217 | 24881.3 | 1 | UniProt (Q21323) Pfam (PF00076) In PDB | Caenorhabditis elegans | |
| 38 | q, r, s, t | Pre-mRNA-processing factor 19 | polymer | 492 | 53272.6 | 4 | UniProt (Q10051) Pfam (PF04564) Pfam (PF08606) Pfam (PF00400) In PDB | Caenorhabditis elegans | PRP19/PSO4 homolog,RING-type E3 ubiquitin transferase PRP19 |
| 39 | y | Peptidyl-prolyl cis-trans isomerase E | polymer | 79 | 8825.0 | 1 | UniProt (Q9U2S6) Pfam (PF00076) In PDB | Caenorhabditis elegans | PPIase E |
| 40 | 6, C | MAGNESIUM ION | non-polymer | 24.3 | 7 | Chemie (MG) | |||
| 41 | A, J | INOSITOL HEXAKISPHOSPHATE | non-polymer | 660.0 | 2 | Chemie (IHP) | |||
| 42 | C | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 43 | L2, N, O | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 49 |
| Total formula weight | 2287213.3 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 2471.2 | |
| All* | Total formula weight | 2289684.6 |
