8RM1
Cryo-EM structure of a Foamy Virus fusion glycoprotein in the postfusion conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E (A, B, C) | Envelope glycoprotein gp130 | polymer | 444 | 52051.0 | 3 | UniProt (K7YEW5) Pfam (PF03408) | Simian foamy virus | Env polyprotein |
| 2 | B, D, F (D, E, F) | Envelope glycoprotein gp130 | polymer | 372 | 42067.8 | 3 | UniProt (K7YEW5) Pfam (PF03408) | Simian foamy virus | Env polyprotein |
| 3 | G, I, K (G, I, K) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 4 | H, J, L (H, J, L) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 5 | M, N, O (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) |
Sequence modifications
D, E, F: 571 - 907 (UniProt: K7YEW5)
| PDB | External Database | Details |
|---|---|---|
| Asp 908 | - | expression tag |
| Asp 909 | - | expression tag |
| Asp 910 | - | expression tag |
| Asp 911 | - | expression tag |
| Lys 912 | - | expression tag |
| Ala 913 | - | expression tag |
| Gly 914 | - | expression tag |
| Trp 915 | - | expression tag |
| Ser 916 | - | expression tag |
| His 917 | - | expression tag |
| Pro 918 | - | expression tag |
| Gln 919 | - | expression tag |
| Phe 920 | - | expression tag |
| Glu 921 | - | expression tag |
| Lys 922 | - | expression tag |
| Gly 923 | - | expression tag |
| Gly 924 | - | expression tag |
| Gly 925 | - | expression tag |
| Ser 926 | - | expression tag |
| Gly 927 | - | expression tag |
| Gly 928 | - | expression tag |
| Gly 929 | - | expression tag |
| Ser 930 | - | expression tag |
| Gly 931 | - | expression tag |
| Gly 932 | - | expression tag |
| Gly 933 | - | expression tag |
| Ser 934 | - | expression tag |
| Trp 935 | - | expression tag |
| Ser 936 | - | expression tag |
| His 937 | - | expression tag |
| Pro 938 | - | expression tag |
| Gln 939 | - | expression tag |
| Phe 940 | - | expression tag |
| Glu 941 | - | expression tag |
| Lys 942 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 282356.4 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 3032.8 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 663.6 | |
| All* | Total formula weight | 286052.8 |
