8RJS
Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I5 intermediate state.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B (A, B) | histidine kinase | polymer | 515 | 57507.5 | 2 | UniProt (A9CI81) Pfam (PF08446) Pfam (PF01590) Pfam (PF00360) | Agrobacterium fabrum str. C58 | |
2 | C, F (A, B) | 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid | non-polymer | 584.7 | 2 | Chemie (EL5) | |||
3 | D, E, G, H, I (A, B) | SULFATE ION | non-polymer | 96.1 | 5 | Chemie (SO4) | |||
4 | J (B) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
5 | K, L (A, B) | water | water | 18.0 | 88 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 502 (UniProt: A9CI81)
PDB | External Database | Details |
---|---|---|
Arg 69 | Lys 69 | engineered mutation |
Lys 83 | Arg 83 | engineered mutation |
Asp 120 | Gly 120 | engineered mutation |
Thr 123 | Ala 123 | engineered mutation |
Leu 163 | Met 163 | engineered mutation |
Glu 168 | Gln 168 | engineered mutation |
Pro 220 | Arg 220 | engineered mutation |
Asn 243 | Ser 243 | engineered mutation |
Phe 244 | Val 244 | engineered mutation |
Asp 269 | Gly 269 | engineered mutation |
Val 276 | Ala 276 | engineered mutation |
Cys 280 | Tyr 280 | engineered mutation |
Ala 294 | Glu 294 | engineered mutation |
Phe 303 | His 303 | engineered mutation |
Arg 333 | His 333 | engineered mutation |
Leu 336 | Ile 336 | engineered mutation |
Arg 349 | Asp 349 | engineered mutation |
Ile 351 | Met 351 | engineered mutation |
Val 386 | Ala 386 | engineered mutation |
Asp 409 | Gly 409 | engineered mutation |
Ile 419 | Leu 419 | engineered mutation |
Ser 469 | Thr 469 | engineered mutation |
Thr 487 | Ala 487 | engineered mutation |
Gly 494 | Glu 494 | engineered mutation |
Met 503 | - | insertion |
Ala 504 | - | insertion |
Gly 505 | - | insertion |
Leu 506 | - | insertion |
Glu 507 | - | insertion |
Tyr 508 | - | insertion |
Lys 509 | - | insertion |
His 510 | - | expression tag |
His 511 | - | expression tag |
His 512 | - | expression tag |
His 513 | - | expression tag |
His 514 | - | expression tag |
His 515 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 115015.0 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 1685.1 | |
All* | Total formula weight | 116700.1 |