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8RJS

Serial femtosecond X-ray structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in I5 intermediate state.

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
histidine kinasepolymer51557507.52UniProt (A9CI81)
Pfam (PF08446)
Pfam (PF01590)
Pfam (PF00360)
Agrobacterium fabrum str. C58
2C, F
(A, B)
3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acidnon-polymer584.72Chemie (EL5)
3D, E, G, H, I
(A, B)
SULFATE IONnon-polymer96.15Chemie (SO4)
4J
(B)
CHLORIDE IONnon-polymer35.51Chemie (CL)
5K, L
(A, B)
waterwater18.088Chemie (HOH)
Sequence modifications
A, B: 1 - 502 (UniProt: A9CI81)
PDBExternal DatabaseDetails
Arg 69Lys 69engineered mutation
Lys 83Arg 83engineered mutation
Asp 120Gly 120engineered mutation
Thr 123Ala 123engineered mutation
Leu 163Met 163engineered mutation
Glu 168Gln 168engineered mutation
Pro 220Arg 220engineered mutation
Asn 243Ser 243engineered mutation
Phe 244Val 244engineered mutation
Asp 269Gly 269engineered mutation
Val 276Ala 276engineered mutation
Cys 280Tyr 280engineered mutation
Ala 294Glu 294engineered mutation
Phe 303His 303engineered mutation
Arg 333His 333engineered mutation
Leu 336Ile 336engineered mutation
Arg 349Asp 349engineered mutation
Ile 351Met 351engineered mutation
Val 386Ala 386engineered mutation
Asp 409Gly 409engineered mutation
Ile 419Leu 419engineered mutation
Ser 469Thr 469engineered mutation
Thr 487Ala 487engineered mutation
Gly 494Glu 494engineered mutation
Met 503-insertion
Ala 504-insertion
Gly 505-insertion
Leu 506-insertion
Glu 507-insertion
Tyr 508-insertion
Lys 509-insertion
His 510-expression tag
His 511-expression tag
His 512-expression tag
His 513-expression tag
His 514-expression tag
His 515-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight115015.0
Non-Polymers*Number of molecules8
Total formula weight1685.1
All*Total formula weight116700.1
*Water molecules are not included.

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PDB entries from 2025-06-18

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