8REF
Crystal structure of HLA B*13:01 in complex with SVLNDILARL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | HLA class I histocompatibility antigen B alpha chain | polymer | 362 | 40515.3 | 1 | UniProt (C5IYE8) Pfam (PF00129) Pfam (PF07654) Pfam (PF06623) In PDB | Homo sapiens (human) | |
| 2 | B | Beta-2-microglobulin | polymer | 100 | 11879.4 | 1 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (human) | |
| 3 | C | Spike protein S2' | polymer | 10 | 1114.3 | 1 | UniProt (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 4 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
| 5 | A, B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 4 | Chemie (EDO) | |||
| 6 | A, C | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
| 7 | water | water | 18.0 | 139 | Chemie (HOH) |
Sequence modifications
B: 1 - 99 (UniProt: P61769)
C: 1 - 10 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Ala 8 | Ser 982 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 53508.9 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 612.6 | |
| All* | Total formula weight | 54121.6 |
