8REB
Cryo-EM structure of bacterial RNA polymerase-sigma54 initial transcribing complex - 6nt complex
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | N | DNA (43-MER) | polymer | 43 | 13167.4 | 1 | Escherichia coli K-12 | ||
2 | R | RNA (5'-R(P*GP*CP*CP*GP*CP*G)-3') | polymer | 6 | 1906.2 | 1 | Klebsiella oxytoca | ||
3 | T | DNA (52-MER) | polymer | 52 | 16088.3 | 1 | Klebsiella oxytoca | ||
4 | A, B | DNA-directed RNA polymerase subunit alpha | polymer | 321 | 35726.8 | 2 | UniProt (P0A7Z4) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) In PDB | Escherichia coli K-12 | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
5 | C | DNA-directed RNA polymerase subunit beta | polymer | 1341 | 150691.8 | 1 | UniProt (P0A8V2) Pfam (PF04560) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) In PDB | Escherichia coli K-12 | |
6 | D | DNA-directed RNA polymerase subunit beta' | polymer | 1373 | 152040.3 | 1 | UniProt (P0A8T7) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) In PDB | Escherichia coli K-12 | |
7 | E | DNA-directed RNA polymerase subunit omega | polymer | 74 | 8449.5 | 1 | UniProt (P0A800) Pfam (PF01192) In PDB | Escherichia coli K-12 | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
8 | M | RNA polymerase sigma-54 factor | polymer | 350 | 39365.3 | 1 | Pfam (PF04963) Pfam (PF04552) UniProt (by SIFTS) (P06223) In PDB | Klebsiella oxytoca | |
9 | D | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
10 | D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 453162.4 | |
Non-Polymers* | Number of molecules | 3 |
Total formula weight | 155.1 | |
All* | Total formula weight | 453317.5 |