8RDW
Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B | Methyl-accepting chemotaxis protein | polymer | 369 | 41159.9 | 1 | UniProt (A0A0M3V8U3) Pfam (PF18845) In PDB | Psychrobacter urativorans | |
| 2 | D | Large ribosomal subunit protein bL12 | polymer | 123 | 12667.5 | 1 | UniProt (A0A0M4SX69) Pfam (PF16320) Pfam (PF00542) In PDB | Psychrobacter urativorans | |
| 3 | F | Small ribosomal subunit protein uS9 | polymer | 128 | 14278.5 | 1 | UniProt (A0A0M4T6M9) Pfam (PF00380) In PDB | Psychrobacter urativorans | |
| 4 | H | Elongation factor Tu | polymer | 396 | 43108.8 | 1 | UniProt (A0A0M4U5B4) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) In PDB | Psychrobacter urativorans | EF-Tu |
| 5 | Z2 | 23S rRNA | polymer | 2882 | 933563.1 | 1 | Psychrobacter urativorans | ||
| 6 | R3 | Small ribosomal subunit protein bS18 | polymer | 76 | 8973.3 | 1 | UniProt (A0A0M5MK69) Pfam (PF01084) In PDB | Psychrobacter urativorans | |
| 7 | A4 | Small ribosomal subunit protein uS2 | polymer | 269 | 29465.5 | 1 | UniProt (A0A0M4TFJ4) Pfam (PF00318) In PDB | Psychrobacter urativorans | |
| 8 | E5 | Small ribosomal subunit protein uS5 | polymer | 171 | 18192.9 | 1 | UniProt (A0A0M3V8J0) Pfam (PF00333) Pfam (PF03719) In PDB | Psychrobacter urativorans | |
| 9 | L6 | Small ribosomal subunit protein uS12 | polymer | 124 | 13753.1 | 1 | UniProt (A0A0M4U4C3) Pfam (PF00164) In PDB | Psychrobacter urativorans | |
| 10 | F7 | Large ribosomal subunit protein uL5 | polymer | 178 | 19841.2 | 1 | UniProt (A0A0M4T1L5) Pfam (PF00281) Pfam (PF00673) In PDB | Psychrobacter urativorans | |
| 11 | D8 | 5S rRNA | polymer | 115 | 36948.9 | 1 | GenBank (930356181) | Psychrobacter urativorans | |
| 12 | E9 | Large ribosomal subunit protein uL4 | polymer | 200 | 21971.3 | 1 | UniProt (A0A0M4U627) Pfam (PF00573) In PDB | Psychrobacter urativorans | |
| 13 | aA | Large ribosomal subunit protein bL32 | polymer | 60 | 7169.2 | 1 | UniProt (A0A0M4SWQ6) Pfam (PF01783) In PDB | Psychrobacter urativorans | |
| 14 | MB | Large ribosomal subunit protein bL17 | polymer | 119 | 13635.9 | 1 | UniProt (A0A0M4U611) Pfam (PF01196) In PDB | Psychrobacter urativorans | |
| 15 | UC | Large ribosomal subunit protein bL25 | polymer | 219 | 23887.2 | 1 | UniProt (A0A0M4U726) Pfam (PF01386) Pfam (PF14693) In PDB | Psychrobacter urativorans | General stress protein CTC |
| 16 | WD | Large ribosomal subunit protein bL28 | polymer | 78 | 9168.8 | 1 | UniProt (A0A0M4T6Y7) Pfam (PF00830) In PDB | Psychrobacter urativorans | |
| 17 | XE | Large ribosomal subunit protein uL29 | polymer | 65 | 7519.6 | 1 | UniProt (A0A0M4TBX9) Pfam (PF00831) In PDB | Psychrobacter urativorans | |
| 18 | RF | Large ribosomal subunit protein uL22 | polymer | 109 | 11933.0 | 1 | UniProt (A0A0M4SWS6) Pfam (PF00237) In PDB | Psychrobacter urativorans | |
| 19 | FG | Small ribosomal subunit protein bS6 | polymer | 134 | 15839.6 | 1 | UniProt (A0A0M4U628) Pfam (PF01250) In PDB | Psychrobacter urativorans | |
| 20 | VH | Large ribosomal subunit protein bL27 | polymer | 85 | 9119.5 | 1 | UniProt (A0A0M4TUE5) Pfam (PF01016) In PDB | Psychrobacter urativorans | |
| 21 | TI | Large ribosomal subunit protein uL24 | polymer | 105 | 11465.1 | 1 | UniProt (A0A0M4TE60) Pfam (PF00467) Pfam (PF17136) In PDB | Psychrobacter urativorans | |
| 22 | fJ | Large ribosomal subunit protein bL31B | polymer | 93 | 10708.7 | 1 | UniProt (A0A0M4SX87) Pfam (PF01197) In PDB | Psychrobacter urativorans | |
| 23 | HK | Small ribosomal subunit protein uS14 | polymer | 101 | 11777.8 | 1 | UniProt (A0A0M3V8P8) Pfam (PF00253) In PDB | Psychrobacter urativorans | |
| 24 | OL | Small ribosomal subunit protein uS15 | polymer | 88 | 10218.7 | 1 | UniProt (A0A0M4TF29) Pfam (PF00312) In PDB | Psychrobacter urativorans | |
| 25 | MM | Small ribosomal subunit protein uS13 | polymer | 118 | 13244.4 | 1 | UniProt (A0A0M5MJL8) Pfam (PF00416) In PDB | Psychrobacter urativorans | |
| 26 | iN | 16S rRNA | polymer | 1590 | 514949.8 | 1 | GenBank (930356181) | Psychrobacter urativorans | |
| 27 | PO | Large ribosomal subunit protein bL20 | polymer | 118 | 13540.0 | 1 | UniProt (A0A0M5MJR6) Pfam (PF00453) In PDB | Psychrobacter urativorans | |
| 28 | SP | Small ribosomal subunit protein uS19 | polymer | 91 | 10336.2 | 1 | UniProt (A0A0M4TUJ8) Pfam (PF00203) In PDB | Psychrobacter urativorans | |
| 29 | BQ | Small ribosomal subunit protein uS8 | polymer | 132 | 14086.3 | 1 | UniProt (A0A0M4U618) Pfam (PF00410) In PDB | Psychrobacter urativorans | |
| 30 | GR | Large ribosomal subunit protein uL6 | polymer | 177 | 19536.3 | 1 | UniProt (A0A0M5MKV2) Pfam (PF00347) In PDB | Psychrobacter urativorans | |
| 31 | GS | Small ribosomal subunit protein uS7 | polymer | 157 | 17760.6 | 1 | UniProt (A0A0M3V8N5) Pfam (PF00177) In PDB | Psychrobacter urativorans | |
| 32 | CT | Small ribosomal subunit protein uS3 | polymer | 241 | 27120.3 | 1 | UniProt (A0A0M4T6V9) Pfam (PF07650) Pfam (PF00189) In PDB | Psychrobacter urativorans | |
| 33 | KU | Small ribosomal subunit protein uS11 | polymer | 129 | 13676.6 | 1 | UniProt (A0A0M3V8P6) Pfam (PF00411) In PDB | Psychrobacter urativorans | |
| 34 | NV | Small ribosomal subunit protein bS21 | polymer | 71 | 8548.2 | 1 | UniProt (A0A0M4SY21) Pfam (PF01165) In PDB | Psychrobacter urativorans | |
| 35 | YW | Large ribosomal subunit protein uL30 | polymer | 59 | 6615.8 | 1 | UniProt (A0A0M4SWR7) Pfam (PF00327) In PDB | Psychrobacter urativorans | |
| 36 | IX | Large ribosomal subunit protein uL13 | polymer | 142 | 15802.3 | 1 | UniProt (A0A0M4TBP4) Pfam (PF00572) In PDB | Psychrobacter urativorans | |
| 37 | JY | Small ribosomal subunit protein uS10 | polymer | 103 | 11635.4 | 1 | UniProt (A0A0M4TE68) Pfam (PF00338) In PDB | Psychrobacter urativorans | |
| 38 | QZ | Small ribosomal subunit protein uS17 | polymer | 91 | 10363.0 | 1 | UniProt (A0A0M4U401) Pfam (PF00366) In PDB | Psychrobacter urativorans | |
| 39 | Ba | Large ribosomal subunit protein bL34 | polymer | 44 | 5292.5 | 1 | UniProt (A0A0M4TEZ6) Pfam (PF00468) In PDB | Psychrobacter urativorans | |
| 40 | Qb | Large ribosomal subunit protein bL21 | polymer | 103 | 11773.7 | 1 | UniProt (A0A0M5TIS3) Pfam (PF00829) In PDB | Psychrobacter urativorans | |
| 41 | Nc | Large ribosomal subunit protein uL18 | polymer | 116 | 12550.4 | 1 | UniProt (A0A0M4TUJ2) Pfam (PF00861) In PDB | Psychrobacter urativorans | |
| 42 | Kd | Large ribosomal subunit protein uL15 | polymer | 146 | 15448.9 | 1 | UniProt (A0A0M4T6V1) Pfam (PF00828) In PDB | Psychrobacter urativorans | |
| 43 | Je | Large ribosomal subunit protein uL14 | polymer | 122 | 13417.8 | 1 | UniProt (A0A0M5MJS2) Pfam (PF00238) In PDB | Psychrobacter urativorans | |
| 44 | Af | Large ribosomal subunit protein uL3 | polymer | 212 | 22236.3 | 1 | UniProt (A0A0M4T1M3) Pfam (PF00297) In PDB | Psychrobacter urativorans | |
| 45 | Lg | Large ribosomal subunit protein uL16 | polymer | 137 | 15626.7 | 1 | UniProt (A0A0M3V8J3) Pfam (PF00252) In PDB | Psychrobacter urativorans | |
| 46 | dh | Large ribosomal subunit protein bL35 | polymer | 65 | 7594.3 | 1 | UniProt (A0A0M4U4I0) Pfam (PF01632) In PDB | Psychrobacter urativorans | |
| 47 | Oi | Large ribosomal subunit protein bL19 | polymer | 130 | 14598.0 | 1 | UniProt (A0A0M4TV08) Pfam (PF01245) In PDB | Psychrobacter urativorans | |
| 48 | Pj | Small ribosomal subunit protein bS16 | polymer | 89 | 9955.4 | 1 | UniProt (A0A0M4T275) Pfam (PF00886) In PDB | Psychrobacter urativorans | |
| 49 | bk | Large ribosomal subunit protein bL33 | polymer | 51 | 6053.3 | 1 | UniProt (A0A0M4SWV1) Pfam (PF00471) In PDB | Psychrobacter urativorans | |
| 50 | Cl | Large ribosomal subunit protein uL2 | polymer | 274 | 30263.1 | 1 | UniProt (A0A0M3V8Q0) Pfam (PF00181) Pfam (PF03947) In PDB | Psychrobacter urativorans | |
| 51 | Dm | Small ribosomal subunit protein uS4 | polymer | 213 | 24279.0 | 1 | UniProt (A0A0M4TE52) Pfam (PF00163) Pfam (PF01479) In PDB | Psychrobacter urativorans | |
| 52 | Sn | Large ribosomal subunit protein uL23 | polymer | 116 | 12816.6 | 1 | UniProt (A0A0M5MJH9) Pfam (PF00276) In PDB | Psychrobacter urativorans | |
| 53 | To | Small ribosomal subunit protein bS20 | polymer | 88 | 9980.6 | 1 | UniProt (A0A0M4T3R2) Pfam (PF01649) In PDB | Psychrobacter urativorans | |
| 54 | ep | Large ribosomal subunit protein bL36 | polymer | 38 | 4330.3 | 1 | UniProt (A0A0M4U3Z5) Pfam (PF00444) In PDB | Psychrobacter urativorans | |
| 55 | C1 | Large ribosomal subunit protein bL9 | polymer | 166 | 18195.2 | 1 | UniProt (A0A0M3V9E8) Pfam (PF01281) Pfam (PF03948) In PDB | Psychrobacter urativorans | |
| 56 | H | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 57 | H | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 58 | water | water | 18.0 | 1 | Chemie (HOH) |
Sequence modifications
D8: 1 - 115 (GenBank: 930356181)
| PDB | External Database | Details |
|---|---|---|
| U 83 | - | insertion |
| A 88 | C 827435 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 55 |
| Total formula weight | 2267994.5 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 467.5 | |
| All* | Total formula weight | 2268462.0 |
