8RD3
Crystal structure of Saccharomyces cerevisiae Nmd4 protein bound to Upf1 helicase domain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | ATP-dependent helicase NAM7 | polymer | 640 | 72303.0 | 1 | UniProt (P30771) Pfam (PF18141) Pfam (PF13086) Pfam (PF13087) | Saccharomyces cerevisiae S288C | |
| 2 | B (B) | Nonsense-mediated decay protein 4 | polymer | 221 | 25560.1 | 1 | UniProt (Q12129) | Saccharomyces cerevisiae S288C | |
| 3 | C, E, F, G, H... (A, B) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 9 | Chemie (EDO) | |||
| 4 | D (A) | SUCCINIC ACID | non-polymer | 118.1 | 1 | Chemie (SIN) | |||
| 5 | I (A) | FORMIC ACID | non-polymer | 46.0 | 1 | Chemie (FMT) | |||
| 6 | L (A) | MALONIC ACID | non-polymer | 104.1 | 1 | Chemie (MLA) | |||
| 7 | O, P (A, B) | water | water | 18.0 | 80 | Chemie (HOH) |
Sequence modifications
A: 221 - 851 (UniProt: P30771)
B: 2 - 218 (UniProt: Q12129)
| PDB | External Database | Details |
|---|---|---|
| Met 218 | - | initiating methionine |
| Ala 219 | - | expression tag |
| Ser 220 | - | expression tag |
| His 852 | - | expression tag |
| His 853 | - | expression tag |
| His 854 | - | expression tag |
| His 855 | - | expression tag |
| His 856 | - | expression tag |
| His 857 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly -2 | - | expression tag |
| Pro -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 97863.1 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 826.8 | |
| All* | Total formula weight | 98689.9 |
