8RCV
Crystal structure of HLA B*13:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | HLA class I histocompatibility antigen B alpha chain | polymer | 362 | 40515.3 | 1 | UniProt (C5IYE8) Pfam (PF00129) Pfam (PF07654) Pfam (PF06623) In PDB | Homo sapiens (human) | |
2 | B | Beta-2-microglobulin | polymer | 100 | 11879.4 | 1 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (human) | |
3 | C | Spike protein S2' | polymer | 10 | 1164.3 | 1 | UniProt (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
4 | A, B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 3 | Chemie (EDO) | |||
5 | A, B | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
6 | water | water | 18.0 | 321 | Chemie (HOH) |
Sequence modifications
B: 1 - 99 (UniProt: P61769)
C: 1 - 10 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met 0 | - | initiating methionine |
PDB | External Database | Details |
---|---|---|
Phe 7 | Leu 981 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 53559.0 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 232.2 | |
All* | Total formula weight | 53791.1 |