8R84
pentameric IgMFc-AIM complex focused refinement
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (N) | CD5 antigen-like | polymer | 328 | 36100.3 | 1 | UniProt (O43866) Pfam (PF00530) | Homo sapiens (human) | |
| 2 | B, C, D, E (B, L, K, A) | Ig-like domain-containing protein | polymer | 361 | 39715.4 | 4 | UniProt (A0A7N5JWI9) Pfam (PF07654) UniProt (by SIFTS) (P01871) | Homo sapiens (human) | |
| 3 | F (J) | Immunoglobulin J chain | polymer | 169 | 19306.9 | 1 | UniProt (P01591) Pfam (PF15097) | Homo sapiens (human) | |
| 4 | G (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 5 | H, I (N) | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) |
Sequence modifications
B, L, K, A: 229 - 576 (UniProt: A0A7N5JWI9)
J: -22 - 136 (UniProt: P01591)
| PDB | External Database | Details |
|---|---|---|
| Asp 216 | - | expression tag |
| Tyr 217 | - | expression tag |
| Lys 218 | - | expression tag |
| Asp 219 | - | expression tag |
| Asp 220 | - | expression tag |
| Asp 221 | - | expression tag |
| Asp 222 | - | expression tag |
| Lys 223 | - | expression tag |
| Gly 224 | - | expression tag |
| Ser 225 | - | expression tag |
| Gly 226 | - | expression tag |
| Ser 227 | - | expression tag |
| Gly 228 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu 137 | - | expression tag |
| Gln 138 | - | expression tag |
| Lys 139 | - | expression tag |
| Leu 140 | - | expression tag |
| Ile 141 | - | expression tag |
| Ser 142 | - | expression tag |
| Glu 143 | - | expression tag |
| Glu 144 | - | expression tag |
| Asp 145 | - | expression tag |
| Leu 146 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 214268.6 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 80.2 | |
| All* | Total formula weight | 214773.2 |






