8R3V
Escherichia coli paused disome complex (non-rotated disome interface)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (12) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli | ribosomal protein bL28 |
| 2 | B (32) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | ribosomal protein uL30 |
| 3 | C (4) | Large ribosomal subunit protein bL31A | polymer | 70 | 7887.1 | 1 | UniProt (P0A7M9) Pfam (PF01197) | Escherichia coli | 50S ribosomal protein L31 |
| 4 | D (62) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Ribosomal protein A, ribosomal protein bL35 |
| 5 | E, F (71, 72) | 23S ribosomal RNA | polymer | 2904 | 941812.6 | 2 | Escherichia coli | ||
| 6 | G (82) | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
| 7 | H, I (A1, A2) | 16S ribosomal RNA | polymer | 1542 | 499873.4 | 2 | Escherichia coli | ||
| 8 | J, K (B, B2) | Small ribosomal subunit protein uS2 | polymer | 241 | 26781.7 | 2 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli | 30S ribosomal protein S2 |
| 9 | L, M (C1, C2) | Small ribosomal subunit protein uS3 | polymer | 233 | 26031.3 | 2 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli | 30S ribosomal protein S3 |
| 10 | N, O (D1, D2) | Small ribosomal subunit protein uS4 | polymer | 206 | 23514.2 | 2 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli | 30S ribosomal protein S4 |
| 11 | P, Q (E1, E2) | Small ribosomal subunit protein uS5 | polymer | 167 | 17629.4 | 2 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) | Escherichia coli | 30S ribosomal protein S5 |
| 12 | R, S (F1, F2) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 2 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | Small ribosomal subunit protein bS6 |
| 13 | T, U (G1, G2) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 2 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | Small ribosomal subunit protein uS7 |
| 14 | V, W (H1, H2) | Small ribosomal subunit protein uS8 | polymer | 130 | 14146.6 | 2 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli | 30S ribosomal protein S8 |
| 15 | X, Y (I1, I2) | Small ribosomal subunit protein uS9 | polymer | 130 | 14886.3 | 2 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli | 30S ribosomal protein S9 |
| 16 | AA, Z (J1, J2) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 2 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli | Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE |
| 17 | BA, CA (K1, K2) | Small ribosomal subunit protein uS11 | polymer | 129 | 13871.0 | 2 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli | 30S ribosomal protein S11 |
| 18 | DA, EA (L1, L2) | Small ribosomal subunit protein uS12 | polymer | 124 | 13768.2 | 2 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli | 30S ribosomal protein S12 |
| 19 | FA, GA (M1, M2) | Small ribosomal subunit protein uS13 | polymer | 118 | 13128.5 | 2 | UniProt (P0A7S9) Pfam (PF00416) | Escherichia coli | 30S ribosomal protein S13 |
| 20 | HA, IA (N1, N2) | Small ribosomal subunit protein uS14 | polymer | 101 | 11606.6 | 2 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli | 30S ribosomal protein S14 |
| 21 | JA, KA (O1, O2) | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 2 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli | Small ribosomal subunit protein uS15 |
| 22 | LA (P1) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli | Small ribosomal subunit protein bS16 |
| 23 | MA, NA (Q1, Q2) | Small ribosomal subunit protein uS17 | polymer | 84 | 9724.5 | 2 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli | 30S ribosomal protein S17 |
| 24 | OA, PA (R1, R2) | Small ribosomal subunit protein bS18 | polymer | 75 | 9005.5 | 2 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli | 30S ribosomal protein S18 |
| 25 | QA, RA (S1, S2) | Small ribosomal subunit protein uS19 | polymer | 92 | 10455.4 | 2 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli | 30S ribosomal protein S19 |
| 26 | SA (T1) | Small ribosomal subunit protein bS20 | polymer | 87 | 9708.5 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli | 30S ribosomal protein S20 |
| 27 | TA, UA (U1, U2) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 2 | UniProt (P68679) Pfam (PF01165) | Escherichia coli | Small ribosomal subunit protein bS21 |
| 28 | VA (V2) | messenger RNA | polymer | 64 | 20786.5 | 1 | Escherichia coli | ||
| 29 | WA (W) | tRNA-Trp (P-site) | polymer | 76 | 24628.9 | 1 | Escherichia coli | ||
| 30 | XA (W1) | tRNA-Phe (P-site) | polymer | 76 | 24651.9 | 1 | Escherichia coli | ||
| 31 | YA (X2) | tRNA-Arg (E-site) | polymer | 77 | 24978.1 | 1 | Escherichia coli | ||
| 32 | ZA (Y1) | tRNA-Val (A-site) | polymer | 76 | 24617.8 | 1 | GenBank (1847302804) | Escherichia coli | |
| 33 | AB (Y2) | tRNA-Ala (A-site) | polymer | 76 | 24555.7 | 1 | GenBank (1845258627) | Escherichia coli | |
| 34 | BB (Z1) | 30S ribosomal protein S1 | polymer | 557 | 61238.9 | 1 | UniProt (P0AG67) Pfam (PF00575) | Escherichia coli | Bacteriophage Q beta RNA-directed RNA polymerase subunit I,Small ribosomal subunit protein bS1 |
| 35 | CB (a2) | Large ribosomal subunit protein uL1 | polymer | 234 | 24765.7 | 1 | UniProt (P0A7L0) Pfam (PF00687) | Escherichia coli | 50S ribosomal protein L1 |
| 36 | DB (b2) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | ribosomal protein uL2 |
| 37 | EB (e2) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | ribosomal protein uL5 |
| 38 | FB (g2) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli | ribosomal protein bL33 |
| 39 | GB (h2) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | ribosomal protein uL16 |
| 40 | HB (i2) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | ribosomal protein bL9 |
| 41 | IB (l2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli | ribosomal protein bL34 |
| 42 | JB (o2) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli | ribosomal protein uL15 |
| 43 | KB (p) | Nascent chain | polymer | 10 | 1087.2 | 1 | Escherichia coli | ||
| 44 | LB (r2) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | ribosomal protein uL18 |
| 45 | MB (z2) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | Large ribosomal subunit protein bL27 |
| 46 | NB, YM (4, B) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 47 | OB, PB (72) | 1,4-DIAMINOBUTANE | non-polymer | 88.2 | 2 | Chemie (PUT) | |||
| 48 | QB (72) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
| 49 | AC, AD, AE, AF, AG... (72, A1, A2, Y2, h2...) | MAGNESIUM ION | non-polymer | 24.3 | 297 | Chemie (MG) | |||
| 50 | BN (Y2) | ALANINE | non-polymer | 89.1 | 1 | Chemie (ALA) |
Sequence modifications
Y1: 1 - 76 (GenBank: 1847302804)
| PDB | External Database | Details |
|---|---|---|
| Cm0 34 | U 1288720 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 65 |
| Total formula weight | 3875069.5 | |
| Non-Polymers* | Number of molecules | 303 |
| Total formula weight | 7760.0 | |
| All* | Total formula weight | 3882829.5 |
