8QZG
1,3 L,D-transpeptidase from Gluconobacter oxydans
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | YkuD domain-containing protein | polymer | 328 | 36058.2 | 1 | UniProt (A0A4R4A0U0) Pfam (PF03734) In PDB | Gluconobacter oxydans | |
2 | 1 | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
3 | 1 | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
4 | water | water | 18.0 | 133 | Chemie (HOH) |
Sequence modifications
1: 53 - 336 (UniProt: A0A4R4A0U0)
PDB | External Database | Details |
---|---|---|
Met 24 | - | initiating methionine |
Lys 25 | - | expression tag |
Tyr 26 | - | expression tag |
Leu 27 | - | expression tag |
Leu 28 | - | expression tag |
Pro 29 | - | expression tag |
Thr 30 | - | expression tag |
Ala 31 | - | expression tag |
Ala 32 | - | expression tag |
Ala 33 | - | expression tag |
Gly 34 | - | expression tag |
Leu 35 | - | expression tag |
Leu 36 | - | expression tag |
Leu 37 | - | expression tag |
Leu 38 | - | expression tag |
Ala 39 | - | expression tag |
Ala 40 | - | expression tag |
Gln 41 | - | expression tag |
Pro 42 | - | expression tag |
Ala 43 | - | expression tag |
Met 44 | - | expression tag |
Ala 45 | - | expression tag |
Met 46 | - | expression tag |
Asp 47 | - | expression tag |
Ile 48 | - | expression tag |
Gly 49 | - | expression tag |
Ile 50 | - | expression tag |
Asn 51 | - | expression tag |
Ser 52 | - | expression tag |
Ala 337 | - | expression tag |
Ala 338 | - | expression tag |
Lys 339 | - | expression tag |
Leu 340 | - | expression tag |
Ala 341 | - | expression tag |
Ala 342 | - | expression tag |
Ala 343 | - | expression tag |
Leu 344 | - | expression tag |
Glu 345 | - | expression tag |
His 346 | - | expression tag |
His 347 | - | expression tag |
His 348 | - | expression tag |
His 349 | - | expression tag |
His 350 | - | expression tag |
His 351 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 36058.2 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 58.4 | |
All* | Total formula weight | 36116.6 |