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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8QSZ

Structure of s. pombe RNA polymerase II in complex with DSIF and Rat1/Rai1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		DNA-directed RNA polymerase II subunit rpb1polymer1752194372.61UniProt (P36594)
Pfam (PF04997)
Pfam (PF05001)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
Pfam (PF04992)
Pfam (PF04990)		Schizosaccharomyces pombe (fission yeast)
2B
(B)		DNA-directed RNA polymerase II subunit RPB2polymer1210138027.21UniProt (Q02061)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF04566)
Pfam (PF04567)
Pfam (PF00562)
Pfam (PF04560)		Schizosaccharomyces pombe (fission yeast)
3C
(C)		DNA-directed RNA polymerase II subunit RPB3polymer29733748.81UniProt (P37382)
Pfam (PF01193)
Pfam (PF01000)		Schizosaccharomyces pombe (fission yeast)
4D
(E)		DNA-directed RNA polymerases I, II, and III subunit RPABC1polymer21023954.51UniProt (Q09191)
Pfam (PF03871)
Pfam (PF01191)		Schizosaccharomyces pombe (fission yeast)
5E
(F)		DNA-directed RNA polymerases I, II, and III subunit RPABC2polymer14215742.51UniProt (P36595)
Pfam (PF01192)		Schizosaccharomyces pombe (fission yeast)
6F
(G)		DNA-directed RNA polymerase II subunit rpb7polymer17219122.01UniProt (O14459)
Pfam (PF03876)
Pfam (PF00575)		Schizosaccharomyces pombe (fission yeast)
7G
(H)		DNA-directed RNA polymerases I, II, and III subunit RPABC3polymer12514317.31UniProt (Q92399)
Pfam (PF03870)		Schizosaccharomyces pombe (fission yeast)
8H
(I)		DNA-directed RNA polymerase II subunit RPB9,RBP9polymer14116253.81UniProt (O74635)
Pfam (PF02150)
Pfam (PF01096)		Schizosaccharomyces pombe (fission yeast)
9I
(J)		DNA-directed RNA polymerases I, II, and III subunit RPABC5polymer718286.81UniProt (O13877)
Pfam (PF01194)		Schizosaccharomyces pombe (fission yeast)
10J
(K)		DNA-directed RNA polymerase II subunit RPB11polymer12314143.31UniProt (P87123)
Pfam (PF13656)		Schizosaccharomyces pombe (fission yeast)
11K
(L)		DNA-directed RNA polymerases I, II, and III subunit RPABC4polymer637216.51UniProt (P48011)
Pfam (PF03604)		Schizosaccharomyces pombe (fission yeast)
12L
(Y)		Transcription elongation factor spt5polymer1122123489.21UniProt (O13936)
Pfam (PF11942)
Pfam (PF03439)
Pfam (PF00467)
Pfam (PF12815)		Schizosaccharomyces pombe (fission yeast)
13M
(N)		DNA none template (34-MER)polymer4814917.51Schizosaccharomyces pombe
14N
(P)		RNA (5'-R(P*AP*UP*CP*GP*AP*GP*AP*GP*GP*U)-3')polymer268245.81Schizosaccharomyces pombe
15O
(T)		DNA template (40-MER)polymer4814659.41Schizosaccharomyces pombe
16P
(X)		5'-3' exoribonuclease 2polymer896102208.31UniProt (P40848)
Pfam (PF03159)
Pfam (PF17846)		Schizosaccharomyces pombe (fission yeast)
17Q
(C)		ZINC IONnon-polymer65.41Chemie (ZN)
Sequence modifications
I: 1 - 113 (UniProt: O74635)
I: 114 - 141 (PDB: 8QSZ)
Y: 1 - 990 (UniProt: O13936)
PDBExternal DatabaseDetails
Met -131-initiating methionine
Lys -130-expression tag
His -129-expression tag
His -128-expression tag
His -127-expression tag
His -126-expression tag
His -125-expression tag
His -124-expression tag
Pro -123-expression tag
Met -122-expression tag
Ser -121-expression tag
Asp -120-expression tag
Lys -119-expression tag
Ile -118-expression tag
Ile -117-expression tag
His -116-expression tag
Leu -115-expression tag
Thr -114-expression tag
Asp -113-expression tag
Asp -112-expression tag
Ser -111-expression tag
Phe -110-expression tag
Asp -109-expression tag
Thr -108-expression tag
Asp -107-expression tag
Val -106-expression tag
Leu -105-expression tag
Lys -104-expression tag
Ala -103-expression tag
Asp -102-expression tag
Gly -101-expression tag
Ala -100-expression tag
Ile -99-expression tag
Leu -98-expression tag
Val -97-expression tag
Asp -96-expression tag
Phe -95-expression tag
Trp -94-expression tag
Ala -93-expression tag
Glu -92-expression tag
Trp -91-expression tag
Cys -90-expression tag
Gly -89-expression tag
Pro -88-expression tag
Cys -87-expression tag
Lys -86-expression tag
Met -85-expression tag
Ile -84-expression tag
Ala -83-expression tag
Pro -82-expression tag
Ile -81-expression tag
Leu -80-expression tag
Asp -79-expression tag
Glu -78-expression tag
Ile -77-expression tag
Ala -76-expression tag
Asp -75-expression tag
Glu -74-expression tag
Tyr -73-expression tag
Gln -72-expression tag
Gly -71-expression tag
Lys -70-expression tag
Leu -69-expression tag
Thr -68-expression tag
Val -67-expression tag
Ala -66-expression tag
Lys -65-expression tag
Leu -64-expression tag
Asn -63-expression tag
Ile -62-expression tag
Asp -61-expression tag
Gln -60-expression tag
Asn -59-expression tag
Pro -58-expression tag
Gly -57-expression tag
Thr -56-expression tag
Ala -55-expression tag
Pro -54-expression tag
Lys -53-expression tag
Tyr -52-expression tag
Gly -51-expression tag
Ile -50-expression tag
Arg -49-expression tag
Gly -48-expression tag
Ile -47-expression tag
Pro -46-expression tag
Thr -45-expression tag
Leu -44-expression tag
Leu -43-expression tag
Leu -42-expression tag
Phe -41-expression tag
Lys -40-expression tag
Asn -39-expression tag
Gly -38-expression tag
Glu -37-expression tag
Val -36-expression tag
Ala -35-expression tag
Ala -34-expression tag
Thr -33-expression tag
Lys -32-expression tag
Val -31-expression tag
Gly -30-expression tag
Ala -29-expression tag
Leu -28-expression tag
Ser -27-expression tag
Lys -26-expression tag
Gly -25-expression tag
Gln -24-expression tag
Leu -23-expression tag
Lys -22-expression tag
Glu -21-expression tag
Phe -20-expression tag
Leu -19-expression tag
Asp -18-expression tag
Ala -17-expression tag
Asn -16-expression tag
Leu -15-expression tag
Ala -14-expression tag
Gly -13-expression tag
Ser -12-expression tag
Gly -11-expression tag
Ser -10-expression tag
Gly -9-expression tag
Ser -8-expression tag
Glu -7-expression tag
Asn -6-expression tag
Leu -5-expression tag
Tyr -4-expression tag
Phe -3-expression tag
Gln -2-expression tag
Gly -1-expression tag
Ala 0-expression tag
X: 1 - 893 (UniProt: P40848)
PDBExternal DatabaseDetails
Ala 237Asp 237conflict
Gly 886Tyr 886conflict
Ser 887Arg 887conflict
His 889Gly 889conflict
His 891Gln 891conflict
His 892Ser 892conflict
His 893Tyr 893conflict
His 894-expression tag
His 895-expression tag
His 896-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains16
Total formula weight748705.6
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight748771.1
*Water molecules are not included.

247536

PDB entries from 2026-01-14

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