8QSQ
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Spike protein S2' | polymer | 195 | 22159.1 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | B | Processed angiotensin-converting enzyme 2 | polymer | 603 | 69982.6 | 1 | UniProt (Q9BYF1) Pfam (PF01401) In PDB | Homo sapiens (human) | |
3 | B | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
A: 329 - 523 (UniProt: P0DTC2)
B: 19 - 615 (UniProt: Q9BYF1)
PDB | External Database | Details |
---|---|---|
Val 329 | Ile 332 | conflict |
His 336 | Gly 339 | variant |
Thr 353 | Lys 356 | conflict |
Phe 368 | Ser 371 | variant |
Pro 370 | Ser 373 | variant |
Phe 372 | Ser 375 | variant |
Ala 373 | Thr 376 | variant |
Lys 400 | Arg 403 | conflict |
Asn 402 | Asp 405 | variant |
Ser 405 | Arg 408 | variant |
Asn 414 | Lys 417 | variant |
Lys 437 | Asn 440 | variant |
His 442 | Val 445 | variant |
Ser 443 | Gly 446 | variant |
Asp 447 | Asn 450 | conflict |
Trp 449 | Leu 452 | variant |
Lys 457 | Asn 460 | variant |
Asn 474 | Ser 477 | variant |
Lys 475 | Thr 478 | variant |
Lys 478 | Asn 481 | conflict |
- | Val 483 | deletion |
Lys 480 | Glu 484 | variant |
Pro 482 | Phe 486 | variant |
Arg 494 | Gln 498 | variant |
Tyr 497 | Asn 501 | variant |
His 501 | Tyr 505 | variant |
PDB | External Database | Details |
---|---|---|
His 616 | - | expression tag |
His 617 | - | expression tag |
His 618 | - | expression tag |
His 619 | - | expression tag |
His 620 | - | expression tag |
His 621 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 92141.6 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 1327.2 | |
All* | Total formula weight | 93468.9 |