8QRG
SARS-CoV-2 delta RBD complexed with XBB-2 Fab and NbC1
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E | Spike protein S1 | polymer | 202 | 22935.7 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | A | NbC1 | polymer | 131 | 14659.1 | 1 | Lama glama | ||
3 | H | XBB-2 heavy chain | polymer | 223 | 23750.6 | 1 | Homo sapiens | ||
4 | L | XBB-2 light chain | polymer | 214 | 23339.8 | 1 | Homo sapiens | ||
5 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
6 | E, A, L | GLYCEROL | non-polymer | 92.1 | 6 | Chemie (GOL) | |||
7 | water | water | 18.0 | 187 | Chemie (HOH) |
Sequence modifications
E: 333 - 526 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
His 330 | - | expression tag |
His 331 | - | expression tag |
His 332 | - | expression tag |
Arg 452 | Leu 452 | variant |
Lys 478 | Thr 478 | variant |
Lys 527 | - | expression tag |
Lys 528 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 84685.3 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 773.8 | |
All* | Total formula weight | 85459.0 |