8QPR
SARS-CoV-2 S protein bound to human neutralising antibody UZGENT_G5
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Spike glycoprotein,Fibritin | polymer | 1288 | 142427.4 | 1 | UniProt (P0DTC2) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
2 | D | IgG light chain - FAB | polymer | 216 | 22866.2 | 1 | Homo sapiens | ||
3 | E | IgG heavy chain - FAB | polymer | 229 | 24397.4 | 1 | Homo sapiens | ||
4 | a, B, F | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
5 | c, G, e | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) |
Sequence modifications
A: 1 - 1208 (UniProt: P0DTC2)
A: 1211 - 1237 (UniProt: P10104)
PDB | External Database | Details |
---|---|---|
Gly 682 | Arg 682 | engineered mutation |
Ser 683 | Arg 683 | engineered mutation |
Ser 685 | Arg 685 | engineered mutation |
Pro 817 | Phe 817 | engineered mutation |
Pro 892 | Ala 892 | engineered mutation |
Pro 899 | Ala 899 | engineered mutation |
Pro 942 | Ala 942 | engineered mutation |
Pro 986 | Lys 986 | engineered mutation |
Pro 987 | Val 987 | engineered mutation |
Gly 1209 | - | linker |
Ser 1210 | - | linker |
PDB | External Database | Details |
---|---|---|
Leu 1232 | Phe 479 | engineered mutation |
Gly 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Ser 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Gln 1246 | - | expression tag |
Gly 1247 | - | expression tag |
Pro 1248 | - | expression tag |
Gly 1249 | - | expression tag |
His 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
His 1255 | - | expression tag |
His 1256 | - | expression tag |
His 1257 | - | expression tag |
Ser 1258 | - | expression tag |
Ala 1259 | - | expression tag |
Trp 1260 | - | expression tag |
Ser 1261 | - | expression tag |
His 1262 | - | expression tag |
Pro 1263 | - | expression tag |
Gln 1264 | - | expression tag |
Phe 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Lys 1267 | - | expression tag |
Gly 1268 | - | expression tag |
Gly 1269 | - | expression tag |
Gly 1270 | - | expression tag |
Ser 1271 | - | expression tag |
Gly 1272 | - | expression tag |
Gly 1273 | - | expression tag |
Gly 1274 | - | expression tag |
Gly 1275 | - | expression tag |
Ser 1276 | - | expression tag |
Gly 1277 | - | expression tag |
Gly 1278 | - | expression tag |
Ser 1279 | - | expression tag |
Ala 1280 | - | expression tag |
Trp 1281 | - | expression tag |
Ser 1282 | - | expression tag |
His 1283 | - | expression tag |
Pro 1284 | - | expression tag |
Gln 1285 | - | expression tag |
Phe 1286 | - | expression tag |
Glu 1287 | - | expression tag |
Lys 1288 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 189691.0 | |
Branched | Number of molecules | 6 |
Total formula weight | 2984.8 | |
All* | Total formula weight | 192675.8 |