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8QPE

Cryo-EM Structure of Pre-B-like Complex (core part)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(4)
U4 snRNApolymer14446181.31GenBank (340142)Homo sapiens (human)
2B
(5)
U5 snRNApolymer11737254.91GenBank (20330981)Homo sapiens (human)
3C
(6)
U6 snRNApolymer10634098.31GenBank (NR_004394.1)Homo sapiens (human)
4D
(7)
Splicing factor 3A subunit 1polymer79388991.11UniProt (Q15459)
Pfam (PF01805)
Pfam (PF12230)
Pfam (PF00240)
Homo sapiens (human)SF3a120,Spliceosome-associated protein 114,SAP 114
5E
(C)
116 kDa U5 small nuclear ribonucleoprotein componentpolymer972109560.61UniProt (Q15029)
Pfam (PF16004)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
Homo sapiens (human)Elongation factor Tu GTP-binding domain-containing protein 2,SNU114 homolog,hSNU114,U5 snRNP-specific protein,116 kDa,U5-116 kDa
6F
(D)
Thioredoxin-like protein 4Apolymer14216807.31UniProt (P83876)
Pfam (PF02966)
Homo sapiens (human)DIM1 protein homolog,Spliceosomal U5 snRNP-specific 15 kDa protein,Thioredoxin-like U5 snRNP protein U5-15kD
7G
(I)
Pre-mRNA-splicing factor 38Apolymer31237563.91UniProt (Q8NAV1)
Pfam (PF03371)
Pfam (PF12871)
Homo sapiens (human)
8H
(K)
Microfibrillar-associated protein 1polymer43952050.51UniProt (P55081)
Pfam (PF06991)
Homo sapiens (human)Spliceosome B complex protein MFAP1
9I
(M)
NHP2-like protein 1, N-terminally processedpolymer12814191.51UniProt (P55769)
Pfam (PF01248)
Homo sapiens (human)
10J
(U)
Ubiquitin carboxyl-terminal hydrolase 39polymer56565481.41UniProt (Q53GS9)
Pfam (PF02148)
Pfam (PF00443)
Homo sapiens (human)SAD1 homolog,U4/U6.U5 tri-snRNP-associated 65 kDa protein
11K
(X)
WW domain-binding protein 4polymer37642575.81UniProt (O75554)
Pfam (PF06220)
Pfam (PF00397)
Homo sapiens (human)WBP-4,Formin-binding protein 21,WW domain-containing-binding protein 4
12L
(r)
Zinc finger matrin-type protein 2polymer19923664.01UniProt (Q96NC0)
Pfam (PF12171)
Homo sapiens (human)
13M
(z1)
oligo1polymer113555.21Homo sapiens
14N
(z2)
oligo2polymer41303.91Homo sapiens
15O
(J)
U4/U6 small nuclear ribonucleoprotein Prp3polymer68377669.21UniProt (O43395)
Pfam (PF01480)
Pfam (PF08572)
Pfam (PF06544)
Homo sapiens (human)Pre-mRNA-splicing factor 3,hPrp3,U4/U6 snRNP 90 kDa protein
16P
(L)
U4/U6 small nuclear ribonucleoprotein Prp31polymer49955529.01UniProt (Q8WWY3)
Pfam (PF01798)
Pfam (PF09785)
Homo sapiens (human)Pre-mRNA-processing factor 31,Serologically defined breast cancer antigen NY-BR-99,U4/U6 snRNP 61 kDa protein,Protein 61K,hPrp31
17Q
(F)
U4/U6 small nuclear ribonucleoprotein Prp4polymer52258536.11UniProt (O43172)
Pfam (PF08799)
Pfam (PF00400)
Homo sapiens (human)PRP4 homolog,hPrp4,U4/U6 snRNP 60 kDa protein,WD splicing factor Prp4
18R
(N)
Pre-mRNA-processing factor 6polymer941107092.21UniProt (O94906)
Pfam (PF06424)
Pfam (PF14559)
Pfam (PF13432)
Homo sapiens (human)Androgen receptor N-terminal domain-transactivating protein 1,ANT-1,PRP6 homolog,U5 snRNP-associated 102 kDa protein,U5-102 kDa protein
19S
(A)
Pre-mRNA-processing-splicing factor 8polymer2335273974.31UniProt (Q6P2Q9)
Pfam (PF12134)
Pfam (PF01398)
Pfam (PF08084)
Pfam (PF08082)
Pfam (PF08083)
Pfam (PF10598)
Pfam (PF10597)
Pfam (PF10596)
Homo sapiens (human)220 kDa U5 snRNP-specific protein,PRP8 homolog,Splicing factor Prp8,p220
20T
(S)
U4/U6.U5 tri-snRNP-associated protein 1polymer80090414.11UniProt (O43290)
Pfam (PF19252)
Pfam (PF03343)
Homo sapiens (human)SNU66 homolog,hSnu66,Squamous cell carcinoma antigen recognized by T-cells 1,SART-1,hSART-1,U4/U6.U5 tri-snRNP-associated 110 kDa protein
21U
(A)
INOSITOL HEXAKISPHOSPHATEnon-polymer660.01Chemie (IHP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains20
Total formula weight1236494.6
Non-Polymers*Number of molecules1
Total formula weight660.0
All*Total formula weight1237154.6
*Water molecules are not included.

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PDB entries from 2025-06-11

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