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8QPE

Cryo-EM Structure of Pre-B-like Complex (core part)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
14U4 snRNApolymer14446181.31GenBank (340142)Homo sapiens (human)
25U5 snRNApolymer11737254.91GenBank (20330981)Homo sapiens (human)
36U6 snRNApolymer10634098.31GenBank (NR_004394.1)Homo sapiens (human)
47Splicing factor 3A subunit 1polymer79388991.11UniProt (Q15459)
Pfam (PF01805)
Pfam (PF12230)
Pfam (PF00240)
In PDB
Homo sapiens (human)SF3a120,Spliceosome-associated protein 114,SAP 114
5C116 kDa U5 small nuclear ribonucleoprotein componentpolymer972109560.61UniProt (Q15029)
Pfam (PF16004)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
In PDB
Homo sapiens (human)Elongation factor Tu GTP-binding domain-containing protein 2,SNU114 homolog,hSNU114,U5 snRNP-specific protein,116 kDa,U5-116 kDa
6DThioredoxin-like protein 4Apolymer14216807.31UniProt (P83876)
Pfam (PF02966)
In PDB
Homo sapiens (human)DIM1 protein homolog,Spliceosomal U5 snRNP-specific 15 kDa protein,Thioredoxin-like U5 snRNP protein U5-15kD
7IPre-mRNA-splicing factor 38Apolymer31237563.91UniProt (Q8NAV1)
Pfam (PF03371)
Pfam (PF12871)
In PDB
Homo sapiens (human)
8KMicrofibrillar-associated protein 1polymer43952050.51UniProt (P55081)
Pfam (PF06991)
In PDB
Homo sapiens (human)Spliceosome B complex protein MFAP1
9MNHP2-like protein 1, N-terminally processedpolymer12814191.51UniProt (P55769)
Pfam (PF01248)
In PDB
Homo sapiens (human)
10UUbiquitin carboxyl-terminal hydrolase 39polymer56565481.41UniProt (Q53GS9)
Pfam (PF02148)
Pfam (PF00443)
In PDB
Homo sapiens (human)SAD1 homolog,U4/U6.U5 tri-snRNP-associated 65 kDa protein
11XWW domain-binding protein 4polymer37642575.81UniProt (O75554)
Pfam (PF06220)
Pfam (PF00397)
In PDB
Homo sapiens (human)WBP-4,Formin-binding protein 21,WW domain-containing-binding protein 4
12rZinc finger matrin-type protein 2polymer19923664.01UniProt (Q96NC0)
Pfam (PF12171)
In PDB
Homo sapiens (human)
13z1oligo1polymer113555.21Homo sapiens
14z2oligo2polymer41303.91Homo sapiens
15JU4/U6 small nuclear ribonucleoprotein Prp3polymer68377669.21UniProt (O43395)
Pfam (PF01480)
Pfam (PF08572)
Pfam (PF06544)
In PDB
Homo sapiens (human)Pre-mRNA-splicing factor 3,hPrp3,U4/U6 snRNP 90 kDa protein
16LU4/U6 small nuclear ribonucleoprotein Prp31polymer49955529.01UniProt (Q8WWY3)
Pfam (PF01798)
Pfam (PF09785)
In PDB
Homo sapiens (human)Pre-mRNA-processing factor 31,Serologically defined breast cancer antigen NY-BR-99,U4/U6 snRNP 61 kDa protein,Protein 61K,hPrp31
17FU4/U6 small nuclear ribonucleoprotein Prp4polymer52258536.11UniProt (O43172)
Pfam (PF08799)
Pfam (PF00400)
In PDB
Homo sapiens (human)PRP4 homolog,hPrp4,U4/U6 snRNP 60 kDa protein,WD splicing factor Prp4
18NPre-mRNA-processing factor 6polymer941107092.21UniProt (O94906)
Pfam (PF06424)
Pfam (PF14559)
Pfam (PF13432)
In PDB
Homo sapiens (human)Androgen receptor N-terminal domain-transactivating protein 1,ANT-1,PRP6 homolog,U5 snRNP-associated 102 kDa protein,U5-102 kDa protein
19APre-mRNA-processing-splicing factor 8polymer2335273974.31UniProt (Q6P2Q9)
Pfam (PF12134)
Pfam (PF01398)
Pfam (PF08084)
Pfam (PF08082)
Pfam (PF08083)
Pfam (PF10598)
Pfam (PF10597)
Pfam (PF10596)
In PDB
Homo sapiens (human)220 kDa U5 snRNP-specific protein,PRP8 homolog,Splicing factor Prp8,p220
20SU4/U6.U5 tri-snRNP-associated protein 1polymer80090414.11UniProt (O43290)
Pfam (PF19252)
Pfam (PF03343)
In PDB
Homo sapiens (human)SNU66 homolog,hSnu66,Squamous cell carcinoma antigen recognized by T-cells 1,SART-1,hSART-1,U4/U6.U5 tri-snRNP-associated 110 kDa protein
21AINOSITOL HEXAKISPHOSPHATEnon-polymer660.01Chemie (IHP)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains20
Total formula weight1236494.6
Non-Polymers*Number of molecules1
Total formula weight660.0
All*Total formula weight1237154.6
*Water molecules are not included.

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PDB entries from 2024-07-24

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