8QCQ

B. subtilis ApdA-stalled ribosomal complex

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	0	50S ribosomal protein L32	polymer	59	6745.1	1	UniProt (O34687) Pfam (PF01783) In PDB	Bacillus subtilis subsp. subtilis str. 168
2	1	50S ribosomal protein L33 1	polymer	49	5915.9	1	UniProt (P56849) Pfam (PF00471) In PDB	Bacillus subtilis subsp. subtilis str. 168
3	2	50S ribosomal protein L34	polymer	44	5271.3	1	UniProt (P05647) Pfam (PF00468) In PDB	Bacillus subtilis subsp. subtilis str. 168
4	3	50S ribosomal protein L35	polymer	66	7581.1	1	UniProt (P55874) Pfam (PF01632) In PDB	Bacillus subtilis subsp. subtilis str. 168
5	4	50S ribosomal protein L36	polymer	37	4318.4	1	UniProt (P20278) Pfam (PF00444) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL38,Ribosomal protein B,Ribosomal protein II
6	6	Large ribosomal subunit protein bL31-A	polymer	65	7330.5	1	UniProt (Q03223) Pfam (PF01197) In PDB	Bacillus subtilis subsp. subtilis str. 168
7	A	23S rRNA	polymer	2925	948733.8	1	GenBank (728882887)	Bacillus subtilis subsp. subtilis str. 168
8	B	5S rRNA	polymer	119	38423.9	1	GenBank (1430100595)	Bacillus subtilis subsp. subtilis str. 168
9	C	50S ribosomal protein L2	polymer	277	30335.1	1	UniProt (P42919) Pfam (PF00181) Pfam (PF03947) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL2
10	D	50S ribosomal protein L3	polymer	209	22723.3	1	UniProt (P42920) Pfam (PF00297) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL3
11	E	50S ribosomal protein L4	polymer	207	22425.0	1	UniProt (P42921) Pfam (PF00573) In PDB	Bacillus subtilis subsp. subtilis str. 168
12	F	50S ribosomal protein L5	polymer	179	20177.6	1	UniProt (P12877) Pfam (PF00281) Pfam (PF00673) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL6
13	G	Large ribosomal subunit protein uL6	polymer	179	19543.4	1	UniProt (P46898) Pfam (PF00347) In PDB	Bacillus subtilis subsp. subtilis str. 168
14	J	50S ribosomal protein L13	polymer	145	16407.1	1	UniProt (P70974) Pfam (PF00572) In PDB	Bacillus subtilis subsp. subtilis str. 168
15	K	50S ribosomal protein L14	polymer	122	13175.3	1	UniProt (P12875) Pfam (PF00238) In PDB	Bacillus subtilis subsp. subtilis str. 168
16	L	50S ribosomal protein L15	polymer	146	15410.7	1	UniProt (P19946) Pfam (PF00828) In PDB	Bacillus subtilis subsp. subtilis str. 168
17	M	50S ribosomal protein L16	polymer	144	16223.0	1	UniProt (P14577) Pfam (PF00252) In PDB	Bacillus subtilis subsp. subtilis str. 168
18	N	50S ribosomal protein L17	polymer	120	13774.8	1	UniProt (P20277) Pfam (PF01196) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL15,BL21
19	O	50S ribosomal protein L18	polymer	120	12993.8	1	UniProt (P46899) Pfam (PF00861) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL16
20	P	50S ribosomal protein L19	polymer	115	13416.9	1	UniProt (O31742) Pfam (PF01245) In PDB	Bacillus subtilis subsp. subtilis str. 168
21	Q	Large ribosomal subunit protein bL20	polymer	119	13669.2	1	UniProt (P55873) Pfam (PF00453) In PDB	Bacillus subtilis subsp. subtilis str. 168
22	R	50S ribosomal protein L21	polymer	102	11296.1	1	UniProt (P26908) Pfam (PF00829) In PDB	Bacillus subtilis subsp. subtilis str. 168	BL20
23	S	50S ribosomal protein L22	polymer	113	12481.6	1	UniProt (P42060) Pfam (PF00237) In PDB	Bacillus subtilis subsp. subtilis str. 168
24	T	Large ribosomal subunit protein uL23	polymer	95	10978.8	1	UniProt (P42924) Pfam (PF00276) In PDB	Bacillus subtilis subsp. subtilis str. 168
25	U	50S ribosomal protein L24	polymer	103	11166.1	1	UniProt (P0CI78) Pfam (PF00467) Pfam (PF17136) In PDB	Bacillus subtilis subsp. subtilis str. 168	12 kDa DNA-binding protein,BL23,HPB12
26	W	Large ribosomal subunit protein bL27	polymer	94	10391.9	1	UniProt (P05657) Pfam (PF01016) In PDB	Bacillus subtilis subsp. subtilis str. 168
27	X	50S ribosomal protein L28	polymer	62	6826.1	1	UniProt (P37807) Pfam (PF00830) In PDB	Bacillus subtilis subsp. subtilis str. 168
28	Y	50S ribosomal protein L29	polymer	66	7728.0	1	UniProt (P12873) Pfam (PF00831) In PDB	Bacillus subtilis subsp. subtilis str. 168
29	Z	Large ribosomal subunit protein uL30	polymer	59	6650.8	1	UniProt (P19947) Pfam (PF00327) In PDB	Bacillus subtilis subsp. subtilis str. 168
30	a	16S rRNA	polymer	1554	503369.1	1	GenBank (225184640)	Bacillus subtilis subsp. subtilis str. 168
31	e	30S ribosomal protein S5	polymer	166	17650.6	1	UniProt (P21467) Pfam (PF00333) Pfam (PF03719) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS5
32	k	30S ribosomal protein S11	polymer	131	13952.0	1	UniProt (P04969) Pfam (PF00411) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS11
33	l	30S ribosomal protein S12	polymer	138	15248.7	1	UniProt (P21472) Pfam (PF00164) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS12
34	o	30S ribosomal protein S15	polymer	89	10597.2	1	UniProt (P21473) Pfam (PF00312) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS18
35	q	30S ribosomal protein S17	polymer	87	10221.0	1	UniProt (P12874) Pfam (PF00366) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS16
36	t	30S ribosomal protein S20	polymer	88	9622.2	1	UniProt (P21477) Pfam (PF01649) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS20
37	y, w	Pro-tRNA	polymer	77	24832.7	2	GenBank (1837880844)	Bacillus subtilis subsp. subtilis str. 168
38	8	mRNA	polymer	6	1788.1	1		Amycolatopsis japonica
39	c	Small ribosomal subunit protein uS3	polymer	206	23050.4	1	UniProt (P21465) Pfam (PF07650) Pfam (PF00189) In PDB	Bacillus subtilis subsp. subtilis str. 168
40	g	Small ribosomal subunit protein uS7	polymer	156	17915.9	1	UniProt (P21469) Pfam (PF00177) In PDB	Bacillus subtilis subsp. subtilis str. 168
41	i	30S ribosomal protein S9	polymer	130	14335.5	1	UniProt (P21470) Pfam (PF00380) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS10
42	j	30S ribosomal protein S10	polymer	102	11687.7	1	UniProt (P21471) Pfam (PF00338) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS13
43	m	30S ribosomal protein S13	polymer	121	13818.1	1	UniProt (P20282) Pfam (PF00416) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS14
44	n	30S ribosomal protein S14	polymer	61	7263.8	1	UniProt (P12878) Pfam (PF00253) In PDB	Bacillus subtilis subsp. subtilis str. 168	30S ribosomal protein S14 type Z,30S ribosomal protein S14-1,BS-A
45	s	30S ribosomal protein S19	polymer	92	10607.3	1	UniProt (P21476) Pfam (PF00203) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS19
46	h	30S ribosomal protein S8	polymer	132	14901.4	1	UniProt (P12879) Pfam (PF00410) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS8
47	r	30S ribosomal protein S18	polymer	79	8990.6	1	UniProt (P21475) Pfam (PF01084) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS21
48	f	30S ribosomal protein S6	polymer	95	11140.5	1	UniProt (P21468) Pfam (PF01250) In PDB	Bacillus subtilis subsp. subtilis str. 168	BS9
49	7	ApdA nascent chain	polymer	9	970.1	1		Amycolatopsis japonica
50	4, 6, n, 0, 1	ZINC ION	non-polymer		65.4	5	Chemie (ZN)
51	A, a, w, B, C...	MAGNESIUM ION	non-polymer		24.3	199	Chemie (MG)
52	A, C, U	POTASSIUM ION	non-polymer		39.1	43	Chemie (K)
53	y	PROLINE	non-polymer		115.1	1	Chemie (PRO)
54		water	water		18.0	1022	Chemie (HOH)

Sequence modifications

6: 1 - 65 (UniProt: Q03223)

PDB	External Database	Details
-	Gln 47	deletion

Contents of the asymmetric unit

Polymers	Number of chains	50
	Total formula weight	2098910.3
Non-Polymers*	Number of molecules	248
	Total formula weight	6960.1
All*	Total formula weight	2105870.4

*Water molecules are not included.