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8QCQ

B. subtilis ApdA-stalled ribosomal complex

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(0)
50S ribosomal protein L32polymer596745.11UniProt (O34687)
Pfam (PF01783)
Bacillus subtilis subsp. subtilis str. 168
2B
(1)
50S ribosomal protein L33 1polymer495915.91UniProt (P56849)
Pfam (PF00471)
Bacillus subtilis subsp. subtilis str. 168
3C
(2)
50S ribosomal protein L34polymer445271.31UniProt (P05647)
Pfam (PF00468)
Bacillus subtilis subsp. subtilis str. 168
4D
(3)
50S ribosomal protein L35polymer667581.11UniProt (P55874)
Pfam (PF01632)
Bacillus subtilis subsp. subtilis str. 168
5E
(4)
50S ribosomal protein L36polymer374318.41UniProt (P20278)
Pfam (PF00444)
Bacillus subtilis subsp. subtilis str. 168BL38,Ribosomal protein B,Ribosomal protein II
6F
(6)
Large ribosomal subunit protein bL31-Apolymer657330.51UniProt (Q03223)
Pfam (PF01197)
Bacillus subtilis subsp. subtilis str. 168
7G
(A)
23S rRNApolymer2925948733.81GenBank (728882887)Bacillus subtilis subsp. subtilis str. 168
8H
(B)
5S rRNApolymer11938423.91GenBank (1430100595)Bacillus subtilis subsp. subtilis str. 168
9I
(C)
50S ribosomal protein L2polymer27730335.11UniProt (P42919)
Pfam (PF00181)
Pfam (PF03947)
Bacillus subtilis subsp. subtilis str. 168BL2
10J
(D)
50S ribosomal protein L3polymer20922723.31UniProt (P42920)
Pfam (PF00297)
Bacillus subtilis subsp. subtilis str. 168BL3
11K
(E)
50S ribosomal protein L4polymer20722425.01UniProt (P42921)
Pfam (PF00573)
Bacillus subtilis subsp. subtilis str. 168
12L
(F)
50S ribosomal protein L5polymer17920177.61UniProt (P12877)
Pfam (PF00281)
Pfam (PF00673)
Bacillus subtilis subsp. subtilis str. 168BL6
13M
(G)
Large ribosomal subunit protein uL6polymer17919543.41UniProt (P46898)
Pfam (PF00347)
Bacillus subtilis subsp. subtilis str. 168
14N
(J)
50S ribosomal protein L13polymer14516407.11UniProt (P70974)
Pfam (PF00572)
Bacillus subtilis subsp. subtilis str. 168
15O
(K)
50S ribosomal protein L14polymer12213175.31UniProt (P12875)
Pfam (PF00238)
Bacillus subtilis subsp. subtilis str. 168
16P
(L)
50S ribosomal protein L15polymer14615410.71UniProt (P19946)
Pfam (PF00828)
Bacillus subtilis subsp. subtilis str. 168
17Q
(M)
50S ribosomal protein L16polymer14416223.01UniProt (P14577)
Pfam (PF00252)
Bacillus subtilis subsp. subtilis str. 168
18R
(N)
50S ribosomal protein L17polymer12013774.81UniProt (P20277)
Pfam (PF01196)
Bacillus subtilis subsp. subtilis str. 168BL15,BL21
19S
(O)
50S ribosomal protein L18polymer12012993.81UniProt (P46899)
Pfam (PF00861)
Bacillus subtilis subsp. subtilis str. 168BL16
20T
(P)
50S ribosomal protein L19polymer11513416.91UniProt (O31742)
Pfam (PF01245)
Bacillus subtilis subsp. subtilis str. 168
21U
(Q)
Large ribosomal subunit protein bL20polymer11913669.21UniProt (P55873)
Pfam (PF00453)
Bacillus subtilis subsp. subtilis str. 168
22V
(R)
50S ribosomal protein L21polymer10211296.11UniProt (P26908)
Pfam (PF00829)
Bacillus subtilis subsp. subtilis str. 168BL20
23W
(S)
50S ribosomal protein L22polymer11312481.61UniProt (P42060)
Pfam (PF00237)
Bacillus subtilis subsp. subtilis str. 168
24X
(T)
Large ribosomal subunit protein uL23polymer9510978.81UniProt (P42924)
Pfam (PF00276)
Bacillus subtilis subsp. subtilis str. 168
25Y
(U)
50S ribosomal protein L24polymer10311166.11UniProt (P0CI78)
Pfam (PF00467)
Pfam (PF17136)
Bacillus subtilis subsp. subtilis str. 16812 kDa DNA-binding protein,BL23,HPB12
26Z
(W)
Large ribosomal subunit protein bL27polymer9410391.91UniProt (P05657)
Pfam (PF01016)
Bacillus subtilis subsp. subtilis str. 168
27AA
(X)
50S ribosomal protein L28polymer626826.11UniProt (P37807)
Pfam (PF00830)
Bacillus subtilis subsp. subtilis str. 168
28BA
(Y)
50S ribosomal protein L29polymer667728.01UniProt (P12873)
Pfam (PF00831)
Bacillus subtilis subsp. subtilis str. 168
29CA
(Z)
Large ribosomal subunit protein uL30polymer596650.81UniProt (P19947)
Pfam (PF00327)
Bacillus subtilis subsp. subtilis str. 168
30DA
(a)
16S rRNApolymer1554503369.11GenBank (225184640)Bacillus subtilis subsp. subtilis str. 168
31EA
(e)
30S ribosomal protein S5polymer16617650.61UniProt (P21467)
Pfam (PF00333)
Pfam (PF03719)
Bacillus subtilis subsp. subtilis str. 168BS5
32FA
(k)
30S ribosomal protein S11polymer13113952.01UniProt (P04969)
Pfam (PF00411)
Bacillus subtilis subsp. subtilis str. 168BS11
33GA
(l)
30S ribosomal protein S12polymer13815248.71UniProt (P21472)
Pfam (PF00164)
Bacillus subtilis subsp. subtilis str. 168BS12
34HA
(o)
30S ribosomal protein S15polymer8910597.21UniProt (P21473)
Pfam (PF00312)
Bacillus subtilis subsp. subtilis str. 168BS18
35IA
(q)
30S ribosomal protein S17polymer8710221.01UniProt (P12874)
Pfam (PF00366)
Bacillus subtilis subsp. subtilis str. 168BS16
36JA
(t)
30S ribosomal protein S20polymer889622.21UniProt (P21477)
Pfam (PF01649)
Bacillus subtilis subsp. subtilis str. 168BS20
37KA, LA
(y, w)
Pro-tRNApolymer7724832.72GenBank (1837880844)Bacillus subtilis subsp. subtilis str. 168
38MA
(8)
mRNApolymer61788.11Amycolatopsis japonica
39NA
(c)
Small ribosomal subunit protein uS3polymer20623050.41UniProt (P21465)
Pfam (PF07650)
Pfam (PF00189)
Bacillus subtilis subsp. subtilis str. 168
40OA
(g)
Small ribosomal subunit protein uS7polymer15617915.91UniProt (P21469)
Pfam (PF00177)
Bacillus subtilis subsp. subtilis str. 168
41PA
(i)
30S ribosomal protein S9polymer13014335.51UniProt (P21470)
Pfam (PF00380)
Bacillus subtilis subsp. subtilis str. 168BS10
42QA
(j)
30S ribosomal protein S10polymer10211687.71UniProt (P21471)
Pfam (PF00338)
Bacillus subtilis subsp. subtilis str. 168BS13
43RA
(m)
30S ribosomal protein S13polymer12113818.11UniProt (P20282)
Pfam (PF00416)
Bacillus subtilis subsp. subtilis str. 168BS14
44SA
(n)
30S ribosomal protein S14polymer617263.81UniProt (P12878)
Pfam (PF00253)
Bacillus subtilis subsp. subtilis str. 16830S ribosomal protein S14 type Z,30S ribosomal protein S14-1,BS-A
45TA
(s)
30S ribosomal protein S19polymer9210607.31UniProt (P21476)
Pfam (PF00203)
Bacillus subtilis subsp. subtilis str. 168BS19
46UA
(h)
30S ribosomal protein S8polymer13214901.41UniProt (P12879)
Pfam (PF00410)
Bacillus subtilis subsp. subtilis str. 168BS8
47VA
(r)
30S ribosomal protein S18polymer798990.61UniProt (P21475)
Pfam (PF01084)
Bacillus subtilis subsp. subtilis str. 168BS21
48WA
(f)
30S ribosomal protein S6polymer9511140.51UniProt (P21468)
Pfam (PF01250)
Bacillus subtilis subsp. subtilis str. 168BS9
49XA
(7)
ApdA nascent chainpolymer9970.11Amycolatopsis japonica
50AB, BB, LK, YA, ZA
(4, 6, n, 0, 1)
ZINC IONnon-polymer65.45Chemie (ZN)
51AC, AD, AE, AF, AG...
(A, a, w, B, C...)
MAGNESIUM IONnon-polymer24.3199Chemie (MG)
52AI, BH, BI, CH, CI...
(A, C, U)
POTASSIUM IONnon-polymer39.143Chemie (K)
53JK
(y)
PROLINEnon-polymer115.11Chemie (PRO)
54AL, BL, CL, DL, MK...
(w, i, j, 7, 3...)
waterwater18.01022Chemie (HOH)
Sequence modifications
6: 1 - 65 (UniProt: Q03223)
PDBExternal DatabaseDetails
-Gln 47deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight2098910.3
Non-Polymers*Number of molecules248
Total formula weight6960.1
All*Total formula weight2105870.4
*Water molecules are not included.

247947

PDB entries from 2026-01-21

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