8Q95
Crystal structure of the SARS-CoV-2 BA.1 RBD with neutralizing-VHHs Ma16B06 and Ma3F05
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Spike protein S1 | polymer | 187 | 21376.0 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | B | Nanobody Ma3F05 | polymer | 131 | 14260.6 | 1 | Vicugna pacos | ||
3 | C | Nanobody Ma16B06 | polymer | 120 | 13182.5 | 1 | Vicugna pacos | ||
4 | water | water | 18.0 | 355 | Chemie (HOH) |
Sequence modifications
A: 334 - 517 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 331 | - | expression tag |
Gly 332 | - | expression tag |
Ser 333 | - | expression tag |
Asp 339 | Gly 339 | variant |
Asp 343 | Asn 343 | conflict |
Leu 371 | Ser 371 | variant |
Pro 373 | Ser 373 | variant |
Phe 375 | Ser 375 | variant |
Ser 391 | Cys 391 | conflict |
Asn 417 | Lys 417 | variant |
Lys 440 | Asn 440 | variant |
Ser 446 | Gly 446 | variant |
Asn 477 | Ser 477 | variant |
Lys 478 | Thr 478 | variant |
Ala 484 | Glu 484 | variant |
Arg 493 | Gln 493 | variant |
Ser 496 | Gly 496 | variant |
Arg 498 | Gln 498 | variant |
Tyr 501 | Asn 501 | variant |
His 505 | Tyr 505 | variant |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 48819.1 | |
All* | Total formula weight | 48819.1 |