8Q87
Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B5) | 28S rRNA | polymer | 4441 | 1439489.4 | 1 | GenBank (KT445934.2) | Gallus gallus (chicken) | |
| 2 | B (B8) | 5.8S rRNA | polymer | 157 | 50446.9 | 1 | GenBank (KT445934.2) | Gallus gallus (chicken) | |
| 3 | C (B7) | 5S rRNA | polymer | 119 | 38322.7 | 1 | GenBank (63782) | Gallus gallus (chicken) | |
| 4 | D (Az) | 60S ribosomal protein L41 | polymer | 25 | 3473.5 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) | Gallus gallus (chicken) | |
| 5 | E (BA) | 60S ribosomal protein L8 | polymer | 257 | 28086.9 | 1 | UniProt (F1NIX0) Pfam (PF00181) Pfam (PF03947) | Gallus gallus (chicken) | |
| 6 | F (BB) | Ribosomal protein uL3 | polymer | 403 | 46201.1 | 1 | UniProt (Q5ZJZ2) Pfam (PF00297) | Gallus gallus (chicken) | |
| 7 | G (BC) | 60S ribosomal protein L4 C-terminal domain-containing protein | polymer | 421 | 46853.3 | 1 | UniProt (Q5ZII1) Pfam (PF00573) Pfam (PF14374) | Gallus gallus (chicken) | |
| 8 | H (BD) | Large ribosomal subunit protein uL18 | polymer | 297 | 34156.4 | 1 | UniProt (P22451) Pfam (PF17144) Pfam (PF14204) | Gallus gallus (chicken) | 60S ribosomal protein L5 |
| 9 | I (BE) | 60S ribosomal protein L6 | polymer | 298 | 34014.5 | 1 | UniProt (Q8UWG7) Pfam (PF03868) Pfam (PF01159) | Gallus gallus (chicken) | |
| 10 | J (BF) | Large ribosomal subunit protein uL30 | polymer | 246 | 28844.5 | 1 | UniProt (Q5ZJ56) Pfam (PF08079) Pfam (PF00327) | Gallus gallus (chicken) | 60S ribosomal protein L7 |
| 11 | K (BG) | Large ribosomal subunit protein eL8 | polymer | 266 | 30064.7 | 1 | UniProt (P32429) Pfam (PF01248) | Gallus gallus (chicken) | 60S ribosomal protein L7a |
| 12 | L (BH) | 60S ribosomal protein L9 | polymer | 192 | 21871.4 | 1 | UniProt (A0A1D5NVI1) Pfam (PF00347) | Gallus gallus (chicken) | |
| 13 | M (BI) | Ribosomal protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16 | polymer | 214 | 24506.9 | 1 | UniProt (Q08200) Pfam (PF00252) | Gallus gallus | 60S ribosomal protein L10,Jun-binding protein JIF-1,Ribosomal protein L10 |
| 14 | N (BJ) | 60S ribosomal protein L11 | polymer | 178 | 20269.4 | 1 | UniProt (A0A1D5P3B1) Pfam (PF00281) Pfam (PF00673) | Gallus gallus (chicken) | |
| 15 | O (BL) | Large ribosomal subunit protein eL13 | polymer | 211 | 24455.9 | 1 | UniProt (P41125) Pfam (PF01294) | Gallus gallus (chicken) | 60S ribosomal protein L13,Breast basic conserved protein 1 |
| 16 | P (BM) | 60S ribosomal protein L14 | polymer | 131 | 15514.6 | 1 | UniProt (Q98TF9) Pfam (PF01929) | Gallus gallus (chicken) | |
| 17 | Q (BN) | Ribosomal protein L15 | polymer | 204 | 24193.3 | 1 | UniProt (F1NQG5) Pfam (PF00827) | Gallus gallus (chicken) | |
| 18 | R (BO) | Ribosomal protein uL13 | polymer | 203 | 23533.3 | 1 | Gallus gallus | ||
| 19 | S (BP) | 60S ribosomal protein L17 | polymer | 184 | 21444.2 | 1 | UniProt (A0A1D5PR40) Pfam (PF00237) | Gallus gallus (chicken) | |
| 20 | T (BQ) | Ribosomal protein eL18 | polymer | 187 | 21411.4 | 1 | Gallus gallus | ||
| 21 | U (BR) | Ribosomal protein L19 | polymer | 196 | 23481.2 | 1 | UniProt (Q5ZKK8) Pfam (PF01280) | Gallus gallus (chicken) | |
| 22 | V (BS) | Ribosomal protein eL20 | polymer | 176 | 20856.6 | 1 | Gallus gallus | ||
| 23 | W (BT) | 60S ribosomal protein L21 | polymer | 160 | 18622.0 | 1 | UniProt (R4GIQ2) Pfam (PF01157) | Gallus gallus (chicken) | |
| 24 | X (BU) | Large ribosomal subunit protein eL22 | polymer | 128 | 14754.9 | 1 | UniProt (Q98TF8) Pfam (PF01776) | Gallus gallus (chicken) | 60S ribosomal protein L22 |
| 25 | Y (BV) | Ribosomal protei uL14 | polymer | 140 | 14892.5 | 1 | Gallus gallus | ||
| 26 | Z (BW) | Ribosomal protein L24 | polymer | 157 | 17837.1 | 1 | UniProt (A0A8V0XRE7) Pfam (PF01246) | Gallus gallus (chicken) | |
| 27 | AA (BX) | Ribosomal protein uL23 | polymer | 155 | 17701.2 | 1 | Gallus gallus | ||
| 28 | BA (BY) | Ribosomal protein L26 like 1 | polymer | 145 | 17303.4 | 1 | UniProt (F2Z4K6) Pfam (PF16906) Pfam (PF00467) | Gallus gallus (chicken) | |
| 29 | CA (BZ) | Large ribosomal subunit protein eL27 | polymer | 136 | 15835.8 | 1 | UniProt (P61355) Pfam (PF00467) Pfam (PF01777) | Gallus gallus (chicken) | 60S ribosomal protein L27 |
| 30 | DA (Ba) | Ribosomal protein uL15 | polymer | 148 | 16851.8 | 1 | Gallus gallus | ||
| 31 | EA (Bb) | 60S ribosomal protein L29 | polymer | 71 | 8433.9 | 1 | UniProt (A0A1L1RNZ2) Pfam (PF01779) | Gallus gallus (chicken) | |
| 32 | FA (Bc) | Large ribosomal subunit protein eL30 | polymer | 115 | 12835.1 | 1 | UniProt (P67883) Pfam (PF01248) | Gallus gallus (chicken) | 60S ribosomal protein L30 |
| 33 | GA (Bd) | 60S ribosomal protein L31 | polymer | 176 | 19836.3 | 1 | UniProt (A0A1L1RT94) Pfam (PF01198) | Gallus gallus (chicken) | |
| 34 | HA (Be) | Ribosomal protein L32 | polymer | 135 | 15955.0 | 1 | UniProt (E1BVB1) Pfam (PF01655) | Gallus gallus (chicken) | |
| 35 | IA (Bf) | Ribosomal protein eL33 | polymer | 110 | 12609.8 | 1 | Gallus gallus | ||
| 36 | JA (Bg) | 60S ribosomal protein L34 | polymer | 117 | 13340.1 | 1 | UniProt (A0A1L1S0X5) Pfam (PF01199) | Gallus gallus (chicken) | |
| 37 | KA (Bh) | Large ribosomal subunit protein uL29 | polymer | 123 | 14593.6 | 1 | UniProt (Q98TF7) Pfam (PF00831) | Gallus gallus (chicken) | 60S ribosomal protein L35 |
| 38 | LA (Bi) | Large ribosomal subunit protein eL36 | polymer | 105 | 12332.0 | 1 | UniProt (Q98TF6) Pfam (PF01158) | Gallus gallus (chicken) | 60S ribosomal protein L36 |
| 39 | MA (Bj) | Ribosomal protein L37 | polymer | 97 | 11103.0 | 1 | UniProt (E1C810) Pfam (PF01907) | Gallus gallus (chicken) | |
| 40 | NA (Bk) | 60S ribosomal protein L38 | polymer | 70 | 8238.9 | 1 | UniProt (E1BU66) Pfam (PF01781) | Gallus gallus (chicken) | |
| 41 | OA (Bl) | Large ribosomal subunit protein eL39 | polymer | 51 | 6398.7 | 1 | UniProt (Q98TF5) Pfam (PF00832) | Gallus gallus (chicken) | 60S ribosomal protein L39 |
| 42 | PA (Bm) | Ubiquitin-60S ribosomal protein L40 | polymer | 128 | 14769.4 | 1 | UniProt (O42388) Pfam (PF00240) Pfam (PF01020) | Gallus gallus (chicken) | |
| 43 | QA (Bo) | Ribosomal protein L36a like | polymer | 105 | 12335.8 | 1 | UniProt (A0A8V0YUB1) Pfam (PF00935) | Gallus gallus (chicken) | |
| 44 | RA (Bp) | Large ribosomal subunit protein eL43 | polymer | 92 | 10271.3 | 1 | UniProt (P32046) Pfam (PF01780) | Gallus gallus (chicken) | 60S ribosomal protein L37a |
| 45 | SA (Br) | 60S ribosomal protein L28 | polymer | 138 | 15920.7 | 1 | UniProt (Q5F346) Pfam (PF01778) | Gallus gallus (chicken) | |
| 46 | TA (A2) | 18S rRNA | polymer | 1823 | 588288.3 | 1 | GenBank (KT445934.2) | Gallus gallus (chicken) | |
| 47 | UA (Aa) | Ribosomal protein eS1 | polymer | 264 | 29924.0 | 1 | Gallus gallus | ||
| 48 | VA (AA) | 40S ribosomal protein S27 | polymer | 84 | 9566.3 | 1 | UniProt (A0A3Q2TV39) Pfam (PF01667) | Gallus gallus (chicken) | |
| 49 | WA (AB) | 40S ribosomal protein S28 | polymer | 69 | 7855.1 | 1 | UniProt (A0A3Q2U825) Pfam (PF01200) | Gallus gallus (chicken) | |
| 50 | XA (Ab) | 40S ribosomal protein S2 | polymer | 264 | 28875.9 | 1 | UniProt (A0A8V0Z891) Pfam (PF00333) Pfam (PF03719) | Gallus gallus (chicken) | |
| 51 | YA (AC) | Ubiquitin | polymer | 156 | 18018.1 | 1 | UniProt (P79781) Pfam (PF00240) Pfam (PF01599) | Gallus gallus (chicken) | |
| 52 | ZA (Ac) | DNA-(apurinic or apyrimidinic site) lyase | polymer | 243 | 26760.4 | 1 | UniProt (F1NPA9) Pfam (PF07650) Pfam (PF00189) | Gallus gallus (chicken) | |
| 53 | AB (Ad) | Small ribosomal subunit protein eS4 | polymer | 263 | 29652.9 | 1 | UniProt (P47836) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Gallus gallus (chicken) | 40S ribosomal protein S4 |
| 54 | BB (AD) | Ribosomal protein eS30 | polymer | 133 | 14536.8 | 1 | Gallus gallus | ||
| 55 | CB (AE) | 40S ribosomal protein S26 | polymer | 115 | 13063.5 | 1 | UniProt (Q5ZM66) Pfam (PF01283) | Gallus gallus (chicken) | |
| 56 | DB (Ae) | Ribosomal protein S5 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Gallus gallus (chicken) | |
| 57 | EB (Af) | Small ribosomal subunit protein eS6 | polymer | 249 | 28723.7 | 1 | UniProt (P47838) Pfam (PF01092) | Gallus gallus (chicken) | 40S ribosomal protein S6 |
| 58 | FB (AF) | Small ribosomal subunit protein RACK1 | polymer | 317 | 35115.7 | 1 | UniProt (P63247) Pfam (PF00400) | Gallus gallus (chicken) | Guanine nucleotide-binding protein subunit beta-like protein 12.3,Receptor for activated C kinase,Receptor of activated protein C kinase 1,Receptor of activated protein kinase C 1,RACK1 |
| 59 | GB (Ag) | 40S ribosomal protein S7 | polymer | 194 | 22153.9 | 1 | UniProt (F1NN16) Pfam (PF01251) | Gallus gallus (chicken) | |
| 60 | HB (AG) | 40S ribosomal protein S29 | polymer | 171 | 18662.6 | 1 | UniProt (A0A8V0Z8V3) Pfam (PF00253) | Gallus gallus (chicken) | |
| 61 | IB (Ah) | 40S ribosomal protein S8 | polymer | 207 | 24112.2 | 1 | UniProt (F1NB02) Pfam (PF01201) | Gallus gallus (chicken) | |
| 62 | JB (Ai) | 40S ribosomal protein S9 | polymer | 194 | 22641.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Gallus gallus (chicken) | |
| 63 | KB (Aj) | Ribosomal protein S10 | polymer | 165 | 18945.9 | 1 | UniProt (E1C4N0) Pfam (PF03501) | Gallus gallus (chicken) | |
| 64 | LB (Ak) | 40S ribosomal protein S11 | polymer | 158 | 18384.7 | 1 | UniProt (Q98TH5) Pfam (PF16205) Pfam (PF00366) | Gallus gallus (chicken) | |
| 65 | MB (Al) | Small ribosomal subunit protein eS12 | polymer | 132 | 14569.0 | 1 | UniProt (P84175) Pfam (PF01248) | Gallus gallus (chicken) | 40S ribosomal protein S12 |
| 66 | NB (Am) | Small ribosomal subunit protein uS15 | polymer | 151 | 17259.4 | 1 | UniProt (Q6ITC7) Pfam (PF08069) Pfam (PF00312) | Gallus gallus (chicken) | 40S ribosomal protein S13 |
| 67 | OB (An) | Ribosomal protein S14 | polymer | 151 | 16302.8 | 1 | UniProt (Q5ZHW8) Pfam (PF00411) | Gallus gallus (chicken) | |
| 68 | PB (Ao) | Small ribosomal subunit protein uS19 | polymer | 145 | 17076.2 | 1 | UniProt (P62846) Pfam (PF00203) | Gallus gallus (chicken) | 40S ribosomal protein S15,RIG protein |
| 69 | QB (Aq) | Small ribosomal subunit protein eS17 | polymer | 135 | 15566.1 | 1 | UniProt (P08636) Pfam (PF00833) | Gallus gallus (chicken) | 40S ribosomal protein S17 |
| 70 | RB (Ar) | 40S ribosomal protein S18 | polymer | 152 | 17759.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Gallus gallus (chicken) | |
| 71 | SB (As) | Ribosomal protein eS19 | polymer | 145 | 16118.5 | 1 | Gallus gallus | ||
| 72 | TB (At) | 40S ribosomal protein S20 | polymer | 119 | 13399.8 | 1 | UniProt (F1NH93) Pfam (PF00338) | Gallus gallus (chicken) | |
| 73 | UB (Au) | Ribosomal protein eS21 | polymer | 83 | 9173.4 | 1 | Gallus gallus | ||
| 74 | VB (Av) | 40S ribosomal protein S15a | polymer | 130 | 14881.6 | 1 | UniProt (A0A3Q3A7P6) Pfam (PF00410) | Gallus gallus (chicken) | |
| 75 | WB (Aw) | Ribosomal protein uS12 | polymer | 143 | 15844.7 | 1 | Gallus gallus | ||
| 76 | XB (Ax) | 40S ribosomal protein S24 | polymer | 131 | 15237.1 | 1 | UniProt (F1NF89) Pfam (PF01282) | Gallus gallus (chicken) | |
| 77 | YB (Ay) | 40S ribosomal protein S25 | polymer | 125 | 13746.2 | 1 | UniProt (A0A8V1A7V4) Pfam (PF03297) | Gallus gallus (chicken) | |
| 78 | ZB (AZ) | Small ribosomal subunit protein uS2 | polymer | 296 | 33093.2 | 1 | UniProt (P50890) Pfam (PF00318) Pfam (PF16122) | Gallus gallus (chicken) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,40S ribosomal protein SA,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40 |
| 79 | AC (Ap) | Ribosomal protein S16 | polymer | 146 | 16445.4 | 1 | UniProt (R4GGJ0) Pfam (PF00380) | Gallus gallus (chicken) | |
| 80 | BC (V) | Phe tRNA | polymer | 76 | 24593.7 | 1 | Gallus gallus | ||
| 81 | CC (S) | SERPINE1 mRNA binding protein 1 | polymer | 404 | 43470.7 | 1 | UniProt (A0A8V0ZUK5) Pfam (PF04774) | Gallus gallus (chicken) | |
| 82 | DC (A) | Elongation factor 2 | polymer | 858 | 95645.5 | 1 | UniProt (Q90705) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Gallus gallus (chicken) | EF-2 |
| 83 | EC (Bs) | Large ribosomal subunit protein uL10 | polymer | 316 | 34322.5 | 1 | UniProt (P47826) Pfam (PF00466) Pfam (PF17777) Pfam (PF00428) | Gallus gallus (chicken) | 60S acidic ribosomal protein P0,60S ribosomal protein L10E |
| 84 | FC (Bt) | 60S ribosomal protein L12 | polymer | 165 | 17766.5 | 1 | UniProt (E1BTG1) Pfam (PF00298) Pfam (PF03946) | Gallus gallus (chicken) | |
| 85 | GC (Bv) | Ribosomal protein | polymer | 217 | 24755.4 | 1 | UniProt (F6SU35) Pfam (PF00687) | Gallus gallus (chicken) | |
| 86 | AD, AE, AF, AG, AH... (B5, BN, A2, BP, BV...) | MAGNESIUM ION | non-polymer | 24.3 | 492 | Chemie (MG) | |||
| 87 | EV, FV, HV, MQ, NQ... (AC, AE, AG, Bg, Bj...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) | |||
| 88 | MV (A) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) | |||
| 89 | AW, AX, BW, BX, CW... (BI, Bo, BL, Bp, BM...) | water | water | 18.0 | 3895 | Chemie (HOH) |
Sequence modifications
B5: 1 - 4441 (GenBank: KT445934.2)
BI: 2 - 5 (PDB: 8Q87)
BI: 6 - 215 (UniProt: Q08200)
A2: 1 - 1823 (GenBank: KT445934.2)
An: 1 - 151 (UniProt: Q5ZHW8)
| PDB | External Database | Details |
|---|---|---|
| Uy1 3295 | U 10374 | conflict |
BI: 6 - 215 (UniProt: Q08200)
A2: 1 - 1823 (GenBank: KT445934.2)
| PDB | External Database | Details |
|---|---|---|
| B8n 1206 | U 3042 | conflict |
| 4ac 1295 | C 3131 | conflict |
| 4ac 1796 | C 3632 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ias 138 | Asp 138 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 3809486.8 | |
| Non-Polymers* | Number of molecules | 501 |
| Total formula weight | 12924.5 | |
| All* | Total formula weight | 3822411.4 |
