8Q5I
Structure of Candida albicans 80S ribosome in complex with cephaeline
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 25S rRNA | polymer | 3359 | 1085306.3 | 1 | GenBank (1305241335) | Candida albicans | |
| 2 | B (3) | 5S | polymer | 121 | 38943.1 | 1 | GenBank (X16634.1) | Candida albicans | |
| 3 | C (4) | 5.8S rRNA | polymer | 158 | 50683.9 | 1 | GenBank (OQ195134.1) | Candida albicans | |
| 4 | D (10) | Mixture of endogenous E-tRNAs | polymer | 14 | 4461.7 | 1 | Candida albicans | ||
| 5 | E (j) | 60S ribosomal protein L2-B | polymer | 254 | 27366.6 | 1 | UniProt (A0A8H6F1X9) Pfam (PF00181) Pfam (PF03947) | Candida albicans | |
| 6 | F (k) | 60S ribosomal protein L3 | polymer | 389 | 44040.8 | 1 | UniProt (Q59LS1) Pfam (PF00297) | Candida albicans | |
| 7 | G (l) | 60S ribosomal protein L4-B | polymer | 363 | 39282.4 | 1 | UniProt (A0A8H6F4H4) Pfam (PF00573) Pfam (PF14374) | Candida albicans | |
| 8 | H (m) | 60S ribosomal protein L5 | polymer | 298 | 34558.0 | 1 | UniProt (Q5AGZ7) Pfam (PF17144) Pfam (PF14204) | Candida albicans | |
| 9 | I (n) | 60S ribosomal protein L6 | polymer | 176 | 19798.0 | 1 | UniProt (Q9P834) | Candida albicans | |
| 10 | J (o) | 60S ribosomal protein L7-A | polymer | 241 | 27447.0 | 1 | UniProt (A0A8H6BVN2) Pfam (PF08079) Pfam (PF00327) | Candida albicans | |
| 11 | K (p) | 60S ribosomal protein L8 | polymer | 262 | 28549.4 | 1 | UniProt (A0A8H6C337) Pfam (PF01248) | Candida albicans | |
| 12 | L (q) | 60S ribosomal protein L9-B | polymer | 191 | 21755.2 | 1 | UniProt (A0A8H6C3N3) Pfam (PF00347) | Candida albicans | |
| 13 | M (r) | 60S ribosomal protein L10 | polymer | 220 | 25236.3 | 1 | UniProt (Q5AIB8) Pfam (PF00252) | Candida albicans | |
| 14 | N (s) | 60S ribosomal protein L11-B | polymer | 174 | 19859.8 | 1 | UniProt (A0A8H6F1S5) Pfam (PF00281) Pfam (PF00673) | Candida albicans | |
| 15 | O (t) | 60S ribosomal protein L13 | polymer | 202 | 23105.8 | 1 | UniProt (A0A8H6F5V7) Pfam (PF01294) | Candida albicans | |
| 16 | P (u) | 60S ribosomal protein L14-B | polymer | 131 | 14748.5 | 1 | UniProt (A0A8H6F332) Pfam (PF01929) | Candida albicans | |
| 17 | Q (v) | 60S ribosomal protein L15-A | polymer | 204 | 24389.3 | 1 | UniProt (Q5A6R1) Pfam (PF00827) | Candida albicans | |
| 18 | R (w) | Ribosomal protein L13 | polymer | 200 | 22685.8 | 1 | UniProt (A0A8H6BZ56) Pfam (PF00572) | Candida albicans | |
| 19 | S (x) | Ribosomal protein L22 | polymer | 185 | 21002.9 | 1 | UniProt (A0A8H6BUG0) Pfam (PF00237) | Candida albicans | |
| 20 | T (y) | 60S ribosomal protein L18-A | polymer | 186 | 20817.4 | 1 | UniProt (A0A8H6C4Y1) Pfam (PF17135) | Candida albicans | |
| 21 | U (z) | 60S ribosomal protein L19-A | polymer | 190 | 21942.8 | 1 | UniProt (A0A1D8PK40) Pfam (PF01280) Pfam (PF25476) | Candida albicans | |
| 22 | V (0) | 60S ribosomal protein L20 | polymer | 172 | 20376.9 | 1 | UniProt (A0A8H6BZJ3) Pfam (PF01775) | Candida albicans | |
| 23 | W (2) | 60S ribosomal protein L21-A | polymer | 160 | 18049.9 | 1 | UniProt (A0A8H6F1C8) Pfam (PF01157) | Candida albicans | |
| 24 | X (5) | 60S ribosomal protein L22-B | polymer | 124 | 14107.9 | 1 | UniProt (A0A1D8PM41) Pfam (PF01776) | Candida albicans | |
| 25 | Y (6) | 60S ribosomal protein L23-A | polymer | 137 | 14508.0 | 1 | UniProt (A0A8H6C444) Pfam (PF00238) | Candida albicans | |
| 26 | Z (7) | 60S ribosomal protein L24-A | polymer | 155 | 17430.3 | 1 | UniProt (A0A8H6C4U1) Pfam (PF01246) | Candida albicans | |
| 27 | AA (8) | 60S ribosomal protein L25 | polymer | 142 | 15873.6 | 1 | UniProt (A0A8H6F6A1) Pfam (PF03939) Pfam (PF00276) | Candida albicans | |
| 28 | BA (9) | Ribosomal protein L24 | polymer | 127 | 14215.5 | 1 | UniProt (A0A8H6F3X2) Pfam (PF16906) | Candida albicans | |
| 29 | CA (AA) | 60S ribosomal protein L27 | polymer | 136 | 15551.4 | 1 | UniProt (Q9P843) | Candida albicans | |
| 30 | DA (AB) | 60S ribosomal protein L28 | polymer | 149 | 16703.4 | 1 | UniProt (A0A8H6BVY8) Pfam (PF00828) | Candida albicans | |
| 31 | EA (AC) | 60S ribosomal protein L29 | polymer | 63 | 7135.3 | 1 | UniProt (A0A8H6F0G8) Pfam (PF01779) | Candida albicans | |
| 32 | FA (AD) | 60S ribosomal protein L30 | polymer | 106 | 11520.4 | 1 | UniProt (A0A1D8PM75) Pfam (PF01248) | Candida albicans | |
| 33 | GA (AE) | 60S ribosomal protein L31-B | polymer | 112 | 12993.1 | 1 | UniProt (A0A8H6F1M1) Pfam (PF01198) | Candida albicans | |
| 34 | HA (AF) | 60S ribosomal protein L32 | polymer | 131 | 14993.7 | 1 | UniProt (O94008) | Candida albicans | |
| 35 | IA (AG) | 60S ribosomal protein L33-A | polymer | 107 | 12138.2 | 1 | UniProt (A0A8H6BW57) Pfam (PF01247) | Candida albicans | |
| 36 | JA (AH) | 60S ribosomal protein L34-B | polymer | 122 | 13774.3 | 1 | UniProt (A0A8H6F171) Pfam (PF01199) | Candida albicans | |
| 37 | KA (AI) | Ribosomal protein L29 | polymer | 120 | 14118.8 | 1 | UniProt (A0A8H6F6B7) Pfam (PF00831) | Candida albicans | |
| 38 | LA (AJ) | 60S ribosomal protein L36 | polymer | 99 | 11096.2 | 1 | UniProt (P47834) | Candida albicans | L39 |
| 39 | MA (AK) | 60S ribosomal protein L37-B | polymer | 90 | 10102.8 | 1 | UniProt (A0A1D8PF45) Pfam (PF01907) | Candida albicans | |
| 40 | NA (AL) | 60S ribosomal protein L38 | polymer | 78 | 8911.5 | 1 | UniProt (A0A1D8PG16) Pfam (PF01781) | Candida albicans | |
| 41 | OA (AM) | 60S ribosomal protein L39 | polymer | 51 | 6347.5 | 1 | UniProt (Q96W55) | Candida albicans | L46 |
| 42 | PA (AN) | 60S ribosomal protein L40-B | polymer | 52 | 6078.4 | 1 | UniProt (A0A1D8PL68) Pfam (PF01020) | Candida albicans | |
| 43 | QA (AO) | 60S ribosomal protein L41 | polymer | 25 | 3396.3 | 1 | UniProt (P9WER7) Pfam (PF05162) | Candida albicans | |
| 44 | RA (AP) | 60S ribosomal protein L42-B | polymer | 106 | 12285.7 | 1 | UniProt (A0A8H6BR69) Pfam (PF00935) | Candida albicans | |
| 45 | SA (AQ) | 60S ribosomal protein L43-A | polymer | 92 | 10136.8 | 1 | UniProt (A0A1D8PP14) Pfam (PF01780) | Candida albicans | |
| 46 | TA (A) | 18S ribosomal RNA | polymer | 1787 | 575838.6 | 1 | GenBank (XR_002086442.1) | Candida albicans | |
| 47 | UA (B) | 40S ribosomal protein S0 | polymer | 261 | 28759.3 | 1 | UniProt (A0A8H6C395) Pfam (PF00318) | Candida albicans | |
| 48 | VA (C) | 40S ribosomal protein S1 | polymer | 256 | 29041.9 | 1 | UniProt (A0A8H6C387) Pfam (PF01015) | Candida albicans | |
| 49 | WA (D) | Ribosomal protein S5 | polymer | 249 | 26917.3 | 1 | UniProt (A0A8H6BZ90) Pfam (PF00333) Pfam (PF03719) | Candida albicans | |
| 50 | XA (E) | Ribosomal protein S3 | polymer | 251 | 27313.6 | 1 | UniProt (A0A8H6BYS1) Pfam (PF07650) Pfam (PF00189) | Candida albicans | |
| 51 | YA (F) | 40S ribosomal protein S4 | polymer | 262 | 29435.4 | 1 | UniProt (A0A1D8PCI6) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Candida albicans | |
| 52 | ZA (G) | Ribosomal protein S7 | polymer | 225 | 25319.9 | 1 | UniProt (A0A8H6BS29) Pfam (PF00177) | Candida albicans | |
| 53 | AB (H) | 40S ribosomal protein S6 | polymer | 236 | 27146.5 | 1 | UniProt (A0A8H6BZ37) Pfam (PF01092) | Candida albicans | |
| 54 | BB (I) | 40S ribosomal protein S7 | polymer | 186 | 21285.8 | 1 | UniProt (A0A8H6C655) Pfam (PF01251) | Candida albicans | |
| 55 | CB (J) | 40S ribosomal protein S8 | polymer | 206 | 22802.0 | 1 | UniProt (A0A8H6F0S0) Pfam (PF01201) | Candida albicans | |
| 56 | DB (K) | Ribosomal protein S4 | polymer | 189 | 21765.1 | 1 | UniProt (A0A8H6F1X2) Pfam (PF00163) Pfam (PF01479) | Candida albicans | |
| 57 | EB (L) | 40S ribosomal protein S10-A | polymer | 118 | 13836.8 | 1 | UniProt (A0A8H6BWQ8) Pfam (PF03501) | Candida albicans | |
| 58 | FB (M) | 40S ribosomal protein S11A | polymer | 155 | 17638.6 | 1 | UniProt (A0A1D8PN83) Pfam (PF16205) Pfam (PF00366) | Candida albicans | |
| 59 | GB (O) | 40S ribosomal protein S13 | polymer | 151 | 16976.8 | 1 | UniProt (A0A8H6F4G0) Pfam (PF08069) Pfam (PF00312) | Candida albicans | |
| 60 | HB (P) | 40S ribosomal protein S14-A | polymer | 132 | 14052.1 | 1 | UniProt (A0A8H6F0V4) Pfam (PF00411) | Candida albicans | |
| 61 | IB (Q) | 40S ribosomal protein S15 | polymer | 142 | 15967.8 | 1 | UniProt (A0A1D8PK22) Pfam (PF00203) | Candida albicans | |
| 62 | JB (R) | 40S ribosomal protein S16 | polymer | 142 | 15769.5 | 1 | UniProt (O94017) | Candida albicans | |
| 63 | KB (S) | 40S ribosomal protein S17-B | polymer | 137 | 15770.3 | 1 | UniProt (A0A8H6BTR7) Pfam (PF00833) | Candida albicans | |
| 64 | LB (T) | 40S ribosomal protein S18-B | polymer | 145 | 17023.8 | 1 | UniProt (A0A8H6F3Y8) Pfam (PF00416) | Candida albicans | |
| 65 | MB (U) | 40S ribosomal protein S19-A | polymer | 145 | 16097.2 | 1 | UniProt (A0A8H6C5L4) Pfam (PF01090) | Candida albicans | |
| 66 | NB (V) | Ribosomal protein S10 | polymer | 119 | 13366.5 | 1 | UniProt (A0A8H6BYJ9) Pfam (PF00338) | Candida albicans | |
| 67 | OB (W) | 40S ribosomal protein S21 | polymer | 87 | 9652.8 | 1 | UniProt (Q9P844) | Candida albicans | |
| 68 | PB (X) | 40S ribosomal protein S22-A | polymer | 130 | 14807.2 | 1 | UniProt (A0A8H6F0N4) Pfam (PF00410) | Candida albicans | |
| 69 | QB (Y) | Ribosomal protein S23 (S12) | polymer | 145 | 16000.8 | 1 | UniProt (A0A8H6F0V0) Pfam (PF00164) | Candida albicans | |
| 70 | RB (Z) | 40S ribosomal protein S24 | polymer | 135 | 15546.9 | 1 | UniProt (A0A8H6C3K1) Pfam (PF01282) | Candida albicans | |
| 71 | SB (b) | 40S ribosomal protein S26 | polymer | 119 | 13606.1 | 1 | UniProt (A0A8H6BTS1) Pfam (PF01283) | Candida albicans | |
| 72 | TB (c) | 40S ribosomal protein S27 | polymer | 82 | 8982.5 | 1 | UniProt (A0A8H6BWE6) Pfam (PF01667) | Candida albicans | |
| 73 | UB (d) | 40S ribosomal protein S28-B | polymer | 67 | 7536.8 | 1 | UniProt (A0A8H6C0A5) Pfam (PF01200) | Candida albicans | |
| 74 | VB (e) | 40S ribosomal protein S29A | polymer | 56 | 6615.6 | 1 | UniProt (A0A1D8PTR4) Pfam (PF00253) | Candida albicans | |
| 75 | WB (f) | 40S ribosomal protein S30 | polymer | 63 | 7127.4 | 1 | UniProt (A0A1D8PSK2) Pfam (PF04758) | Candida albicans | |
| 76 | XB (g) | DNA (5'-R(P*GP*GP*CP*AP*G)-3') | polymer | 5 | 1625.0 | 1 | Synthetic construct | ||
| 77 | YB (1) | SPERMINE (FULLY PROTONATED FORM) | non-polymer | 206.4 | 1 | Chemie (SPK) | |||
| 78 | AC, NM, ZB (1, A) | Cephaeline | non-polymer | 466.6 | 3 | Chemie (K16) PubChem (2665) PubChem (10218) PubChem (22127) PubChem (6326599) PubChem (6604507) PubChem (6712961) PubChem (442195) PubChem (9982002) PubChem (12302705) PubChem (92209763) PubChem (92855158) PubChem (102601114) PubChem (126968797) PubChem (124356313) PubChem (124523789) PubChem (133687773) PubChem (138113412) PubChem (171686474) PubChem (172012107) | |||
| 79 | BC (1) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) PubChem (1102) | |||
| 80 | AD, AE, AF, AG, AH... (1, j, A, k, o...) | MAGNESIUM ION | non-polymer | 24.3 | 367 | Chemie (MG) PubChem (888) | |||
| 81 | IM, JM, KM, KQ, LQ... (AK, AN, AP, b, c...) | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 82 | AR, AS, BR, BS, CR... (w, O, x, P, y...) | water | water | 18.0 | 1166 | Chemie (HOH) |
Sequence modifications
P: 1 - 132 (UniProt: A0A8H6F0V4)
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asp 119 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 76 |
| Total formula weight | 3011452.9 | |
| Non-Polymers* | Number of molecules | 379 |
| Total formula weight | 11129.3 | |
| All* | Total formula weight | 3022582.1 |
