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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8Q5I

Structure of Candida albicans 80S ribosome in complex with cephaeline

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1125S rRNApolymer33591085306.31GenBank (1305241335)Candida albicans
235Spolymer12138943.11GenBank (X16634.1)Candida albicans
345.8S rRNApolymer15850683.91GenBank (OQ195134.1)Candida albicans
410Mixture of endogenous E-tRNAspolymer144461.71Candida albicans
5j60S ribosomal protein L2-Bpolymer25427366.61UniProt (A0A8H6F1X9)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Candida albicans
6k60S ribosomal protein L3polymer38944040.81UniProt (Q59LS1)
Pfam (PF00297)
In PDB		Candida albicans
7l60S ribosomal protein L4-Bpolymer36339282.41UniProt (A0A8H6F4H4)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Candida albicans
8m60S ribosomal protein L5polymer29834558.01UniProt (Q5AGZ7)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Candida albicans
9n60S ribosomal protein L6polymer17619798.01UniProt (Q9P834)
Pfam (PF01159)
In PDB		Candida albicans
10o60S ribosomal protein L7-Apolymer24127447.01UniProt (A0A8H6BVN2)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Candida albicans
11p60S ribosomal protein L8polymer26228549.41UniProt (A0A8H6C337)
Pfam (PF01248)
In PDB		Candida albicans
12q60S ribosomal protein L9-Bpolymer19121755.21UniProt (A0A8H6C3N3)
Pfam (PF00347)
In PDB		Candida albicans
13r60S ribosomal protein L10polymer22025236.31UniProt (Q5AIB8)
Pfam (PF00252)
In PDB		Candida albicans
14s60S ribosomal protein L11-Bpolymer17419859.81UniProt (A0A8H6F1S5)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Candida albicans
15t60S ribosomal protein L13polymer20223105.81UniProt (A0A8H6F5V7)
Pfam (PF01294)
In PDB		Candida albicans
16u60S ribosomal protein L14-Bpolymer13114748.51UniProt (A0A8H6F332)
Pfam (PF01929)
In PDB		Candida albicans
17v60S ribosomal protein L15-Apolymer20424389.31UniProt (Q5A6R1)
Pfam (PF00827)
In PDB		Candida albicans
18wRibosomal protein L13polymer20022685.81UniProt (A0A8H6BZ56)
Pfam (PF00572)
In PDB		Candida albicans
19xRibosomal protein L22polymer18521002.91UniProt (A0A8H6BUG0)
Pfam (PF00237)
In PDB		Candida albicans
20y60S ribosomal protein L18-Apolymer18620817.41UniProt (A0A8H6C4Y1)
Pfam (PF17135)
In PDB		Candida albicans
21z60S ribosomal protein L19-Apolymer19021942.81UniProt (A0A1D8PK40)
Pfam (PF01280)
In PDB		Candida albicans
22060S ribosomal protein L20polymer17220376.91UniProt (A0A8H6BZJ3)
Pfam (PF01775)
In PDB		Candida albicans
23260S ribosomal protein L21-Apolymer16018049.91UniProt (A0A8H6F1C8)
Pfam (PF01157)
In PDB		Candida albicans
24560S ribosomal protein L22-Bpolymer12414107.91UniProt (A0A1D8PM41)
Pfam (PF01776)
In PDB		Candida albicans
25660S ribosomal protein L23-Apolymer13714508.01UniProt (A0A8H6C444)
Pfam (PF00238)
In PDB		Candida albicans
26760S ribosomal protein L24-Apolymer15517430.31UniProt (A0A8H6C4U1)
Pfam (PF01246)
In PDB		Candida albicans
27860S ribosomal protein L25polymer14215873.61UniProt (A0A8H6F6A1)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Candida albicans
289Ribosomal protein L24polymer12714215.51UniProt (A0A8H6F3X2)
Pfam (PF16906)
In PDB		Candida albicans
29AA60S ribosomal protein L27polymer13615551.41UniProt (Q9P843)
Pfam (PF01777)
In PDB		Candida albicans
30AB60S ribosomal protein L28polymer14916703.41UniProt (A0A8H6BVY8)
Pfam (PF00828)
In PDB		Candida albicans
31AC60S ribosomal protein L29polymer637135.31UniProt (A0A8H6F0G8)
Pfam (PF01779)
In PDB		Candida albicans
32AD60S ribosomal protein L30polymer10611520.41UniProt (A0A1D8PM75)
Pfam (PF01248)
In PDB		Candida albicans
33AE60S ribosomal protein L31-Bpolymer11212993.11UniProt (A0A8H6F1M1)
Pfam (PF01198)
In PDB		Candida albicans
34AF60S ribosomal protein L32polymer13114993.71UniProt (O94008)
Pfam (PF01655)
In PDB		Candida albicans
35AG60S ribosomal protein L33-Apolymer10712138.21UniProt (A0A8H6BW57)
Pfam (PF01247)
In PDB		Candida albicans
36AH60S ribosomal protein L34-Bpolymer12213774.31UniProt (A0A8H6F171)
Pfam (PF01199)
In PDB		Candida albicans
37AIRibosomal protein L29polymer12014118.81UniProt (A0A8H6F6B7)
Pfam (PF00831)
In PDB		Candida albicans
38AJ60S ribosomal protein L36polymer9911096.21UniProt (P47834)
Pfam (PF01158)
In PDB		Candida albicansL39
39AK60S ribosomal protein L37-Bpolymer9010102.81UniProt (A0A1D8PF45)
Pfam (PF01907)
In PDB		Candida albicans
40AL60S ribosomal protein L38polymer788911.51UniProt (A0A1D8PG16)
Pfam (PF01781)
In PDB		Candida albicans
41AM60S ribosomal protein L39polymer516347.51UniProt (Q96W55)
Pfam (PF00832)
In PDB		Candida albicansL46
42AN60S ribosomal protein L40-Bpolymer526078.41UniProt (A0A1D8PL68)
Pfam (PF01020)
In PDB		Candida albicans
43AO60S ribosomal protein L41polymer253396.31UniProt (P9WER7)
Pfam (PF05162)
In PDB		Candida albicans
44AP60S ribosomal protein L42-Bpolymer10612285.71UniProt (A0A8H6BR69)
Pfam (PF00935)
In PDB		Candida albicans
45AQ60S ribosomal protein L43-Apolymer9210136.81UniProt (A0A1D8PP14)
Pfam (PF01780)
In PDB		Candida albicans
46A18S ribosomal RNApolymer1787575838.61GenBank (XR_002086442.1)Candida albicans
47B40S ribosomal protein S0polymer26128759.31UniProt (A0A8H6C395)
Pfam (PF00318)
In PDB		Candida albicans
48C40S ribosomal protein S1polymer25629041.91UniProt (A0A8H6C387)
Pfam (PF01015)
In PDB		Candida albicans
49DRibosomal protein S5polymer24926917.31UniProt (A0A8H6BZ90)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Candida albicans
50ERibosomal protein S3polymer25127313.61UniProt (A0A8H6BYS1)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Candida albicans
51F40S ribosomal protein S4polymer26229435.41UniProt (A0A1D8PCI6)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB		Candida albicans
52GRibosomal protein S7polymer22525319.91UniProt (A0A8H6BS29)
Pfam (PF00177)
In PDB		Candida albicans
53H40S ribosomal protein S6polymer23627146.51UniProt (A0A8H6BZ37)
Pfam (PF01092)
In PDB		Candida albicans
54I40S ribosomal protein S7polymer18621285.81UniProt (A0A8H6C655)
Pfam (PF01251)
In PDB		Candida albicans
55J40S ribosomal protein S8polymer20622802.01UniProt (A0A8H6F0S0)
Pfam (PF01201)
In PDB		Candida albicans
56KRibosomal protein S4polymer18921765.11UniProt (A0A8H6F1X2)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Candida albicans
57L40S ribosomal protein S10-Apolymer11813836.81UniProt (A0A8H6BWQ8)
Pfam (PF03501)
In PDB		Candida albicans
58M40S ribosomal protein S11Apolymer15517638.61UniProt (A0A1D8PN83)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Candida albicans
59O40S ribosomal protein S13polymer15116976.81UniProt (A0A8H6F4G0)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Candida albicans
60P40S ribosomal protein S14-Apolymer13214052.11UniProt (A0A8H6F0V4)
Pfam (PF00411)
In PDB		Candida albicans
61Q40S ribosomal protein S15polymer14215967.81UniProt (A0A1D8PK22)
Pfam (PF00203)
In PDB		Candida albicans
62R40S ribosomal protein S16polymer14215769.51UniProt (O94017)
Pfam (PF00380)
In PDB		Candida albicans
63S40S ribosomal protein S17-Bpolymer13715770.31UniProt (A0A8H6BTR7)
Pfam (PF00833)
In PDB		Candida albicans
64T40S ribosomal protein S18-Bpolymer14517023.81UniProt (A0A8H6F3Y8)
Pfam (PF00416)
In PDB		Candida albicans
65U40S ribosomal protein S19-Apolymer14516097.21UniProt (A0A8H6C5L4)
Pfam (PF01090)
In PDB		Candida albicans
66VRibosomal protein S10polymer11913366.51UniProt (A0A8H6BYJ9)
Pfam (PF00338)
In PDB		Candida albicans
67W40S ribosomal protein S21polymer879652.81UniProt (Q9P844)
Pfam (PF01249)
In PDB		Candida albicans
68X40S ribosomal protein S22-Apolymer13014807.21UniProt (A0A8H6F0N4)
Pfam (PF00410)
In PDB		Candida albicans
69YRibosomal protein S23 (S12)polymer14516000.81UniProt (A0A8H6F0V0)
Pfam (PF00164)
In PDB		Candida albicans
70Z40S ribosomal protein S24polymer13515546.91UniProt (A0A8H6C3K1)
Pfam (PF01282)
In PDB		Candida albicans
71b40S ribosomal protein S26polymer11913606.11UniProt (A0A8H6BTS1)
Pfam (PF01283)
In PDB		Candida albicans
72c40S ribosomal protein S27polymer828982.51UniProt (A0A8H6BWE6)
Pfam (PF01667)
In PDB		Candida albicans
73d40S ribosomal protein S28-Bpolymer677536.81UniProt (A0A8H6C0A5)
Pfam (PF01200)
In PDB		Candida albicans
74e40S ribosomal protein S29Apolymer566615.61UniProt (A0A1D8PTR4)
Pfam (PF00253)
In PDB		Candida albicans
75f40S ribosomal protein S30polymer637127.41UniProt (A0A1D8PSK2)
Pfam (PF04758)
In PDB		Candida albicans
76gDNA (5'-R(P*GP*GP*CP*AP*G)-3')polymer51625.01Synthetic construct
771SPERMINE (FULLY PROTONATED FORM)non-polymer206.41Chemie (SPK)
781, ACephaelinenon-polymer466.63Chemie (K16)
791SPERMIDINEnon-polymer145.21Chemie (SPD)
801, j, A, k, o...MAGNESIUM IONnon-polymer24.3367Chemie (MG)
81AK, AN, AP, b, c...ZINC IONnon-polymer65.47Chemie (ZN)
82waterwater18.01166Chemie (HOH)
Sequence modifications
P: 1 - 132 (UniProt: A0A8H6F0V4)
PDBExternal DatabaseDetails
Ias 119Asp 119conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains76
Total formula weight3011452.9
Non-Polymers*Number of molecules379
Total formula weight11129.3
All*Total formula weight3022582.1
*Water molecules are not included.

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PDB entries from 2024-07-24

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